C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048402 Spata7-001 ENSMUSG00000021007 10090 + 12:98628157-98669815 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048402
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048402 1.210±0.42 2.015±0.75 2.178±0.01 4.011±1.86 0.855±0.32 1.917±0.47 0.616±0.33 1.296±0.42 0.521±0.35 2.130±0.44 0.411±0.27 2.384±0.98 0.758±0.22 19.752±4.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KO CIL_0004KO_0002 CGP 12:98433994-98669815
CIL_0004KP CIL_0004KP_0002 CGP 12:98628157-98737405

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007601 IEA visual perception
GO:0008150 ND biological_process
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000045347 SPATA7-004 protein_coding Homo_sapiens 0 433
ENST00000356583 SPATA7-201 protein_coding Homo_sapiens 4e-29 134
ENST00000393545 SPATA7-002 protein_coding Homo_sapiens 0 460
ENST00000553626 SPATA7-003 retained_intron Homo_sapiens 0 460
ENST00000553885 SPATA7-015 protein_coding Homo_sapiens 2e-29 134
ENST00000553908 SPATA7-018 nonsense_mediated_decay Homo_sapiens 2e-29 134
ENST00000554102 SPATA7-012 processed_transcript Homo_sapiens 0 320
ENST00000554168 SPATA7-006 nonsense_mediated_decay Homo_sapiens 0.00000002 64
ENST00000555356 SPATA7-010 nonsense_mediated_decay Homo_sapiens 0.00000002 64
ENST00000555401 SPATA7-014 protein_coding Homo_sapiens 0.00000002 64
ENST00000555515 SPATA7-013 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000555534 SPATA7-008 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000555715 SPATA7-011 nonsense_mediated_decay Homo_sapiens 0 193
ENST00000556553 SPATA7-001 protein_coding Homo_sapiens 5e-29 134
ENST00000556870 SPATA7-007 nonsense_mediated_decay Homo_sapiens 2e-29 134
ENST00000557248 SPATA7-017 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000557567 SPATA7-016 retained_intron Homo_sapiens 0 279
ENST00000557724 SPATA7-009 nonsense_mediated_decay Homo_sapiens 0 255

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