C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, non-receptor type 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048957 Ptpn13-201 ENSMUSG00000034573 10090 + 5:103425192-103598359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048957
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048957 7.243±5.31 1.689±0.36 13.063±0.92 3.678±0.48 2.621±0.52 3.654±0.49 0.793±0.12 10.753±2.34 0.466±0.30 9.363±0.99 0.212±0.08 13.382±4.01 6.606±5.76 2.355±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052Z CIL_00052Z_0003 CGP 5:102907948-103598359
CIL_0006J4 CIL_0006J4_0002 CGP 5:103425192-103629403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0030027 IEA lamellipodium
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0043005 IEA neuron projection
GO:0044297 IEA cell body
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000144506 ptpn13-001 protein_coding Danio_rerio 0 204
ENSDART00000109442 ptpn13-201 protein_coding Danio_rerio 3e-36 159
ENST00000316707 PTPN13-002 protein_coding Homo_sapiens 0 2359
ENST00000411767 PTPN13-003 protein_coding Homo_sapiens 0 4532
ENST00000427191 PTPN13-001 protein_coding Homo_sapiens 0 2939
ENST00000436978 PTPN13-201 protein_coding Homo_sapiens 0 4464
ENST00000511467 PTPN13-005 protein_coding Homo_sapiens 0 4457

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