C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: group specific component
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049209 Gc-201 ENSMUSG00000035540 10090 - 5:89417511-89457898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049209
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049209 0.195±0.10 0.470±0.13 0.032±0.00 0.050±0.01 4.573±0.32 0.178±0.17 0.303±0.28 35.701±1.99 987.168±691.11 0.669±0.24 0.137±0.19 0.750±0.59 29.889±33.25 0.030±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D9 CIL_0000D9_0002 CGP 5:88886818-89457898
CIL_0000DA CIL_0000DA_0002 CGP 5:89417511-89583740

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0042359 IDA vitamin D metabolic process
GO:0051180 IEA vitamin transport
GO:0051183 IEA vitamin transporter activity
GO:0070062 IEA extracellular vesicular exosome
GO:0072562 IEA blood microparticle
GO:1902118 IEA calcidiol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273951 GC-001 protein_coding Homo_sapiens 0 1170
ENST00000503472 GC-005 processed_transcript Homo_sapiens 0 859
ENST00000504199 GC-006 protein_coding Homo_sapiens 0 1168
ENST00000506245 GC-007 protein_coding Homo_sapiens 0 429
ENST00000509740 GC-003 nonsense_mediated_decay Homo_sapiens 0 957
ENST00000513476 GC-004 protein_coding Homo_sapiens 0 1136

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