C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylinositol binding clathrin assembly protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049537 Picalm-201 ENSMUSG00000039361 10090 + 7:90130232-90209447 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049537
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049537 15.088±2.24 21.798±8.43 35.959±6.53 22.398±11.92 12.050±3.02 18.850±4.26 9.212±0.67 28.019±2.02 33.561±23.88 17.423±4.00 15.532±1.44 14.211±7.88 20.629±8.23 11.381±6.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004P CIL_00004P_0002 CGP 7:90130232-90265432

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005545 ISS 1-phosphatidylinositol binding
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0005905 ISS coated pit
GO:0006898 ISS receptor-mediated endocytosis
GO:0007409 IMP axonogenesis
GO:0008283 ISS cell proliferation
GO:0010629 ISS negative regulation of gene expression
GO:0016020 IEA membrane
GO:0016188 IMP synaptic vesicle maturation
GO:0016197 IEA endosomal transport
GO:0030097 IMP hemopoiesis
GO:0030100 IEA regulation of endocytosis
GO:0030122 IEA AP-2 adaptor complex
GO:0030132 IEA clathrin coat of coated pit
GO:0030276 ISS clathrin binding
GO:0031623 IEA receptor internalization
GO:0031982 IDA vesicle
GO:0032050 IEA clathrin heavy chain binding
GO:0032880 IEA regulation of protein localization
GO:0035459 IMP cargo loading into vesicle
GO:0035615 ISS clathrin adaptor activity
GO:0043025 ISS neuronal cell body
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0048261 IEA negative regulation of receptor-mediated endocytosis
GO:0048268 IEA clathrin coat assembly
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048813 IMP dendrite morphogenesis
GO:0055072 ISS iron ion homeostasis
GO:0072583 IMP clathrin-mediated endocytosis
GO:0097418 ISS neurofibrillary tangle
GO:0097459 ISS iron ion import into cell
GO:1901216 ISS positive regulation of neuron death
GO:1902004 IMP positive regulation of beta-amyloid formation
GO:1902959 ISS regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process
GO:1902961 IMP positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process
GO:1902963 IMP negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000195649 SNAP91-009 protein_coding Homo_sapiens 0 433
ENST00000356360 PICALM-006 protein_coding Homo_sapiens 0 2715
ENST00000369690 SNAP91-017 protein_coding Homo_sapiens 0 254
ENST00000369694 SNAP91-001 protein_coding Homo_sapiens 0 433
ENST00000393346 PICALM-005 protein_coding Homo_sapiens 0 3277
ENST00000439399 SNAP91-007 protein_coding Homo_sapiens 0 433
ENST00000518309 SNAP91-018 protein_coding Homo_sapiens 0 254
ENST00000518312 SNAP91-004 nonsense_mediated_decay Homo_sapiens 5e-17 95
ENST00000519779 SNAP91-013 protein_coding Homo_sapiens 0 254
ENST00000519825 SNAP91-019 protein_coding Homo_sapiens 2e-22 110
ENST00000520213 SNAP91-005 protein_coding Homo_sapiens 0 377
ENST00000520302 SNAP91-006 protein_coding Homo_sapiens 0 433
ENST00000521485 SNAP91-002 protein_coding Homo_sapiens 0 433
ENST00000521616 SNAP91-010 nonsense_mediated_decay Homo_sapiens 1e-16 94
ENST00000521743 SNAP91-008 protein_coding Homo_sapiens 0 442
ENST00000521931 SNAP91-011 protein_coding Homo_sapiens 0 427
ENST00000522248 SNAP91-015 nonsense_mediated_decay Homo_sapiens 0 196
ENST00000523199 SNAP91-014 nonsense_mediated_decay Homo_sapiens 5e-18 95
ENST00000523484 SNAP91-016 protein_coding Homo_sapiens 0 196
ENST00000523585 SNAP91-012 nonsense_mediated_decay Homo_sapiens 6e-18 95
ENST00000525162 PICALM-008 protein_coding Homo_sapiens 0 761
ENST00000526033 PICALM-001 protein_coding Homo_sapiens 0 4855
ENST00000526548 PICALM-022 retained_intron Homo_sapiens 0 475
ENST00000526907 PICALM-024 retained_intron Homo_sapiens 1.4013e-45 187
ENST00000526961 PICALM-019 protein_coding Homo_sapiens 0 1027
ENST00000528256 PICALM-010 protein_coding Homo_sapiens 0 811
ENST00000528398 PICALM-003 protein_coding Homo_sapiens 0 1729
ENST00000528411 PICALM-009 processed_transcript Homo_sapiens 0 492
ENST00000529016 PICALM-023 protein_coding Homo_sapiens 0 562
ENST00000529760 PICALM-018 protein_coding Homo_sapiens 0 976
ENST00000530542 PICALM-017 protein_coding Homo_sapiens 0 1195
ENST00000530692 PICALM-021 protein_coding Homo_sapiens 0 793
ENST00000531558 PICALM-012 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000531771 PICALM-014 retained_intron Homo_sapiens 0 726
ENST00000531930 PICALM-007 protein_coding Homo_sapiens 0 987
ENST00000532041 PICALM-011 nonsense_mediated_decay Homo_sapiens 0 636
ENST00000532317 PICALM-002 protein_coding Homo_sapiens 0 2654
ENST00000532603 PICALM-020 protein_coding Homo_sapiens 0 372
ENST00000533350 PICALM-015 retained_intron Homo_sapiens 0 324
ENST00000534375 PICALM-016 retained_intron Homo_sapiens 0 320
ENST00000534412 PICALM-013 nonsense_mediated_decay Homo_sapiens 0 1026

Loading