C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurotrophin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050484 Ntf3-201 ENSMUSG00000049107 10090 - 6:126101413-126166744 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000050484
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050484 0.244±0.00 0.855±0.00 0.698±0.00 0.598±0.35 0.658±0.00 0.195±0.00 0.159±0.15 0.327±0.11 0.356±0.09 0.525±0.34 0.144±0.10 0.196±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006C3 CIL_0006C3_0002 CGP 6:125690419-126166744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005166 TAS neurotrophin p75 receptor binding
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007274 IDA neuromuscular synaptic transmission
GO:0007403 IMP glial cell fate determination
GO:0007411 IDA axon guidance
GO:0007420 IMP brain development
GO:0007422 IMP peripheral nervous system development
GO:0008083 IEA growth factor activity
GO:0008544 IMP epidermis development
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0021675 IMP nerve development
GO:0042490 IGI mechanoreceptor differentiation
GO:0043523 IDA regulation of neuron apoptotic process
GO:0043524 IMP negative regulation of neuron apoptotic process
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048484 IMP enteric nervous system development
GO:0048666 IMP neuron development
GO:0048699 IGI generation of neurons
GO:0051145 IMP smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331010 NTF3-002 protein_coding Homo_sapiens 0 1304
ENST00000423158 NTF3-001 protein_coding Homo_sapiens 0 1471
ENST00000543548 NTF3-006 processed_transcript Homo_sapiens 0 390

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