C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051401 Cldn4-201 ENSMUSG00000047501 10090 - 5:134945126-134946934 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051401
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051401 7.975±7.88 0.042±0.03 93.265±37.59 1.200±0.13 61.897±25.30 88.850±8.12 0.322±0.07 17.170±1.85 0.332±0.27 6.411±1.71 0.070±0.03 5.496±2.72 60.084±32.53 0.792±0.89

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0005923 IDA tight junction
GO:0007565 IEA female pregnancy
GO:0009925 IEA basal plasma membrane
GO:0016021 NAS integral component of membrane
GO:0016324 IEA apical plasma membrane
GO:0016327 IEA apicolateral plasma membrane
GO:0016328 IEA lateral plasma membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0032570 IEA response to progesterone
GO:0042802 ISS identical protein binding
GO:0061436 IEA establishment of skin barrier

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340958 CLDN4-201 protein_coding Homo_sapiens 1e-19 102
ENST00000431918 CLDN4-001 protein_coding Homo_sapiens 3e-19 102
ENST00000435050 CLDN4-002 protein_coding Homo_sapiens 3e-19 102

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