C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: par-6 family cell polarity regulator beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052125 Pard6b-001 ENSMUSG00000044641 10090 + 2:168081004-168101203 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052125
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052125 1.820±1.02 0.978±0.16 3.785±0.76 2.355±1.06 1.537±0.57 12.429±1.39 1.014±0.19 21.615±0.73 2.666±0.36 30.300±0.91 0.267±0.08 5.036±1.33 21.230±15.61 2.652±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZW CIL_0007ZW_0002 VISTA 2:167542374-168145654
CIL_0007VZ CIL_0007VZ_0002 VISTA 2:167749064-168350864
CIL_000170 CIL_000170_0002 CGP 2:167980164-168101203

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 ISS plasma membrane
GO:0005923 ISS tight junction
GO:0005938 IDA cell cortex
GO:0006461 ISS protein complex assembly
GO:0007049 IEA cell cycle
GO:0043234 IEA protein complex
GO:0045177 IDA apical part of cell
GO:0051301 IEA cell division
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371610 PARD6B-001 protein_coding Homo_sapiens 0 880
ENST00000396039 PARD6B-002 protein_coding Homo_sapiens 0 385

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