C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: par-6 family cell polarity regulator beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371610 PARD6B-001 ENSG00000124171 9606 + 20:50731544-50753741 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371610
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371610 0.242±0.00 0.519±0.00 6.942±0.00 0.613±0.03 0.845±0.00 1.135±0.69 0.539±0.01 3.100±1.64 1.250±0.31 3.645±0.52 0.188±0.00 2.408±1.69 1.744±1.02 2.228±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VZ CIL_0007VZ_0001 VISTA 20:50389770-50992625
CIL_000170 CIL_000170_0001 CGP 20:50586108-50756795

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0005923 IDA tight junction
GO:0005938 IEA cell cortex
GO:0006461 IDA protein complex assembly
GO:0007043 TAS cell-cell junction assembly
GO:0007049 IEA cell cycle
GO:0007163 TAS establishment or maintenance of cell polarity
GO:0007409 TAS axonogenesis
GO:0030334 TAS regulation of cell migration
GO:0034329 TAS cell junction assembly
GO:0043234 IEA protein complex
GO:0045177 IEA apical part of cell
GO:0045216 TAS cell-cell junction organization
GO:0051301 IEA cell division
GO:0070062 IDA extracellular vesicular exosome
GO:0070830 TAS tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052125 Pard6b-001 protein_coding Mus_musculus 0 880

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