C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin beta 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000239449 PCDHB14-001 ENSG00000120327 9606 + 5:141222932-141227759 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000239449
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000239449 0.869±0.00 0.887±0.00 1.706±0.00 1.135±0.25 0.948±0.14 0.655±0.28 0.075±0.00 0.758±0.69 1.084±0.00 0.750±0.35 0.359±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062S CIL_00062S_000E CGP 5:141213919-141227759

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 TAS synaptic transmission
GO:0007416 TAS synapse assembly
GO:0016020 IEA membrane
GO:0016021 NAS integral component of membrane
GO:0016339 NAS calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052179 Pcdhb20-201 protein_coding Mus_musculus 0 2017
ENSMUST00000056522 Pcdhb2-201 protein_coding Mus_musculus 0 998
ENSMUST00000052387 Pcdhb14-201 protein_coding Mus_musculus 0 981
ENSMUST00000051754 Pcdhb3-201 protein_coding Mus_musculus 0 894
ENSMUST00000056712 Pcdhb4-201 protein_coding Mus_musculus 0 881
ENSMUST00000053856 Pcdhb17-201 protein_coding Mus_musculus 0 852
ENSMUST00000050034 Pcdhb15-201 protein_coding Mus_musculus 0 837
ENSMUST00000053073 Pcdhb11-201 protein_coding Mus_musculus 0 797
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000007 58

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