C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubinuclein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052449 Ubn1-201 ENSMUSG00000039473 10090 + 16:5050068-5086285 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052449
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052449 10.164±2.57 10.235±1.24 11.409±0.45 8.593±1.71 7.998±4.36 8.548±3.33 4.411±1.55 9.250±0.84 5.153±2.46 10.908±3.59 5.439±2.51 11.589±2.67 7.795±3.18 8.396±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00004T CIL_00004T_0002 CGP 16:5013906-5086285
CIL_0001FC CIL_0001FC_0002 CGP 16:5050068-5132481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISO nucleus
GO:0005923 IDA tight junction
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0008134 ISO transcription factor binding
GO:0010923 ISS negative regulation of phosphatase activity
GO:0016568 IEA chromatin modification
GO:0030216 TAS keratinocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262376 UBN1-001 protein_coding Homo_sapiens 0 4045
ENST00000396658 UBN1-002 protein_coding Homo_sapiens 0 4045
ENST00000585857 UBN1-007 processed_transcript Homo_sapiens 0 490
ENST00000586716 UBN1-006 protein_coding Homo_sapiens 0 752
ENST00000587027 UBN1-005 nonsense_mediated_decay Homo_sapiens 0 760
ENST00000589191 UBN1-008 nonsense_mediated_decay Homo_sapiens 3e-37 159
ENST00000590769 UBN1-004 protein_coding Homo_sapiens 0 3474
ENST00000592120 UBN1-003 protein_coding Homo_sapiens 0 785

Loading