C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkB, alkylation repair homolog 8 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053407 Alkbh8-201 ENSMUSG00000025899 10090 + 9:3335478-3387050 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053407
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053407 0.542±0.22 0.249±0.01 0.567±0.00 2.606±0.00 0.234±0.08 0.314±0.14 0.353±0.24 0.524±0.18 1.691±1.90 0.517±0.34 0.601±0.17 0.952±0.54 1.851±0.77 0.687±0.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0016300 ISS tRNA (uracil) methyltransferase activity
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0030488 ISS tRNA methylation
GO:0046872 IEA metal ion binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260318 ALKBH8-004 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000389568 ALKBH8-002 protein_coding Homo_sapiens 0 1659
ENST00000393100 ALKBH8-006 nonsense_mediated_decay Homo_sapiens 0 771
ENST00000417449 ALKBH8-005 protein_coding Homo_sapiens 0 1635
ENST00000428149 ALKBH8-001 protein_coding Homo_sapiens 0 1659
ENST00000452221 RP5-1092L12.2-001 processed_pseudogene Homo_sapiens 0 455

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