C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053819 Srsf4-001 ENSMUSG00000028911 10090 + 4:131873617-131901706 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000053819
Transcript ID Adrenal Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000053819 2.150±0.32 3.531±0.17 9.015±2.53 6.386±2.68 1.840±0.38 5.059±4.21 7.239±3.79 4.581±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0005634 IEA nucleus
GO:0044822 IEA poly(A) RNA binding
GO:0048025 IEA negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000020251 srsf6a-201 protein_coding Danio_rerio 8e-37 159
ENSDART00000103747 srsf6a-001 protein_coding Danio_rerio 8e-32 143
ENST00000373795 SRSF4-001 protein_coding Homo_sapiens 0 2109
ENST00000466448 SRSF4-002 processed_transcript Homo_sapiens 0 917
ENST00000472353 SRSF4-006 processed_transcript Homo_sapiens 1.99965e-42 176
ENST00000477193 SRSF4-003 processed_transcript Homo_sapiens 0 231
ENST00000489898 SRSF4-004 processed_transcript Homo_sapiens 5e-37 158
ENST00000497015 SRSF4-005 processed_transcript Homo_sapiens 0 667
ENST00000605204 SRSF4-007 nonsense_mediated_decay Homo_sapiens 0 435
ENST00000622143 SRSF4-008 processed_transcript Homo_sapiens 0 488

Loading