C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulon 4 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054418 Rtn4ip1-001 ENSMUSG00000019864 10090 + 10:43901807-43947862 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054418
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054418 5.343±0.58 3.120±0.35 4.821±0.02 3.817±1.63 5.607±1.79 3.633±1.73 19.769±4.10 12.141±0.80 5.458±1.38 2.840±0.77 6.853±0.87 2.194±0.85 2.960±1.10 3.326±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085F CIL_00085F_0002 VISTA 10:43422435-44024831
CIL_0008PN CIL_0008PN_0002 VISTA 10:43446138-44046678

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 ISO mitochondrion
GO:0008270 IEA zinc ion binding
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369063 RTN4IP1-001 protein_coding Homo_sapiens 0 1428
ENST00000539449 RTN4IP1-201 protein_coding Homo_sapiens 0 773
ENST00000553021 RP11-453D16.2-001 processed_pseudogene Homo_sapiens 0 1166

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