C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00085F_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1483 VISTA 9606 6:106472954-107074777
GeneTranscriptPositionBiotype
ENSG00000112297 (AIM1)
absent in melanoma 1 		ENST00000369066 (AIM1-001) 106511855-106570451 protein_coding
ENST00000457437 (AIM1-002) 106541134-106555897 protein_coding
ENST00000487681 (AIM1-003) 106544584-106552314 processed_transcript
ENSG00000130347 (RTN4IP1)
reticulon 4 interacting protein 1 		ENST00000369063 (RTN4IP1-001) 106571971-106629487 protein_coding
ENST00000493619 (RTN4IP1-002) 106571977-106572411 processed_transcript
ENST00000498091 (RTN4IP1-003) 106571975-106583631 processed_transcript
ENST00000539449 (RTN4IP1-201) 106572003-106629021 protein_coding
ENSG00000130348 (QRSL1)
glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 		ENST00000369044 (QRSL1-006) 106629614-106653823 protein_coding
ENST00000369046 (QRSL1-005) 106629578-106668417 protein_coding
ENST00000467262 (QRSL1-004) 106629599-106640862 processed_transcript
ENSG00000130349 (C6orf203)
chromosome 6 open reading frame 203 		ENST00000311381 (C6orf203-001) 107028213-107051342 protein_coding
ENST00000405204 (C6orf203-003) 107028213-107051336 protein_coding
ENST00000489790 (C6orf203-002) 107039992-107040907 processed_transcript
ENSG00000178409 (BEND3)
BEN domain containing 3 		ENST00000369042 (BEND3-001) 107065182-107115269 protein_coding
ENST00000429433 (BEND3-201) 107065187-107114432 protein_coding
ENSG00000207577 (MIR587)
microRNA 587 		ENST00000384845 (MIR587-201) 106784125-106784220 miRNA
ENSG00000216977 (RPL21P65)
ribosomal protein L21 pseudogene 65 		ENST00000406094 (RPL21P65-001) 106642463-106642928 processed_pseudogene
ENSG00000229654 (RP1-60O19.2)
 ENST00000424162 (RP1-60O19.2-001) 106695535-106699994 lincRNA
ENSG00000235142 (RP1-60O19.1)
 ENST00000415714 (RP1-60O19.1-001) 106747085-106772293 lincRNA
ENST00000418134 (RP1-60O19.1-005) 106724615-106740087 retained_intron
ENST00000427903 (RP1-60O19.1-007) 106747250-106787435 lincRNA
ENST00000428750 (RP1-60O19.1-003) 106717992-106787431 lincRNA
ENST00000430094 (RP1-60O19.1-006) 106772118-106787479 lincRNA
ENST00000433965 (RP1-60O19.1-002) 106747090-106787474 lincRNA
ENST00000436659 (RP1-60O19.1-004) 106717452-106787425 lincRNA
ENST00000602621 (RP1-60O19.1-008) 106717452-106746004 lincRNA
ENST00000602934 (RP1-60O19.1-009) 106770126-106775004 lincRNA
ENST00000606430 (RP1-60O19.1-011) 106754400-106787541 lincRNA
ENST00000607090 (RP1-60O19.1-010) 106774461-106782467 lincRNA
ENST00000607758 (RP1-60O19.1-012) 106735045-106739775 retained_intron
ENSG00000272398 (CD24)
CD24 molecule 		ENST00000606017 (CD24-201) 106969833-106974755 protein_coding
ENST00000610952 (CD24-002) 106971469-106975627 protein_coding
ENST00000615659 (CD24-004) 106971003-106975327 protein_coding
ENST00000619133 (CD24-001) 106969831-106975465 protein_coding
ENST00000619869 (CD24-003) 106971360-106975459 protein_coding
ENST00000620405 (CD24-006) 106971094-106974732 protein_coding
ENST00000621311 (CD24-005) 106973387-106975162 processed_transcript
ENST00000622315 (CD24-007) 106971380-106974039 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00085F_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1483 VISTA 10090 10:43422435-44024831
GeneTranscriptPositionBiotype
ENSMUSG00000019797 (1700021F05Rik)
RIKEN cDNA 1700021F05 gene 		ENSMUST00000019932 (1700021F05Rik-201) 43525121-43540994 protein_coding
ENSMUST00000126463 (1700021F05Rik-002) 43533154-43540994 processed_transcript
ENSMUST00000147196 (1700021F05Rik-001) 43525133-43540968 protein_coding
ENSMUST00000152926 (1700021F05Rik-003) 43525159-43525843 processed_transcript
ENSMUSG00000019863 (Qrsl1)
glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 		ENSMUST00000020012 (Qrsl1-001) 43874188-43901745 protein_coding
ENSMUST00000146937 (Qrsl1-003) 43874422-43877104 retained_intron
ENSMUST00000154405 (Qrsl1-002) 43880914-43901745 retained_intron
ENSMUSG00000019864 (Rtn4ip1)
reticulon 4 interacting protein 1 		ENSMUST00000054418 (Rtn4ip1-001) 43901807-43947862 protein_coding
ENSMUST00000105492 (Rtn4ip1-002) 43921035-43947862 protein_coding
ENSMUSG00000019866 (Aim1)
absent in melanoma 1 		ENSMUST00000020017 (Aim1-201) 43950307-44004846 protein_coding
ENSMUSG00000038214 (Bend3)
BEN domain containing 3 		ENSMUST00000040147 (Bend3-201) 43479140-43515396 protein_coding
ENSMUST00000167488 (Bend3-202) 43479140-43515396 protein_coding
ENSMUSG00000038240 (Pdss2)
prenyl (solanesyl) diphosphate synthase, subunit 2 		ENSMUST00000095725 (Pdss2-001) 43221486-43440602 protein_coding
ENSMUST00000159139 (Pdss2-006) 43221600-43464882 protein_coding
ENSMUST00000160108 (Pdss2-002) 43221517-43346519 retained_intron
ENSMUST00000160823 (Pdss2-004) 43221486-43405395 nonsense_mediated_decay
ENSMUST00000162008 (Pdss2-005) 43393921-43440248 protein_coding
ENSMUST00000162758 (Pdss2-003) 43221736-43346116 retained_intron
ENSMUSG00000045886 (Gm9803)
predicted gene 9803 		ENSMUST00000057649 (Gm9803-201) 43524102-43524617 protein_coding
ENSMUSG00000047139 (Cd24a)
CD24a antigen 		ENSMUST00000058714 (Cd24a-201) 43579169-43584262 protein_coding
ENSMUSG00000075184 (F930017D23Rik)
RIKEN cDNA F930017D23 gene 		ENSMUST00000099888 (F930017D23Rik-201) 43593427-43630916 protein_coding
ENSMUSG00000094852 (Gm9034)
predicted pseudogene 9034 		ENSMUST00000182071 (Gm9034-001) 43821231-43822235 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00085F_0001ENSG00000112297ENST00000369066ENST00000457437ENST00000487681ENSG00000130347ENST00000369063ENST00000493619ENST00000498091ENST00000539449ENSG00000130348ENST00000369044ENST00000369046ENST00000467262ENSG00000130349ENST00000311381ENST00000405204ENST00000489790ENSG00000178409ENST00000369042ENST00000429433ENSG00000207577ENST00000384845ENSG00000216977ENST00000406094ENSG00000229654ENST00000424162ENSG00000235142ENST00000415714ENST00000418134ENST00000427903ENST00000428750ENST00000430094ENST00000433965ENST00000436659ENST00000602621ENST00000602934ENST00000606430ENST00000607090ENST00000607758ENSG00000272398ENST00000606017ENST00000610952ENST00000615659ENST00000619133ENST00000619869ENST00000620405ENST00000621311ENST00000622315CIL_00085F_0002ENSMUSG00000019797ENSMUST00000019932ENSMUST00000126463ENSMUST00000147196ENSMUST00000152926ENSMUSG00000019863ENSMUST00000020012ENSMUST00000146937ENSMUST00000154405ENSMUSG00000019864ENSMUST00000054418ENSMUST00000105492ENSMUSG00000019866ENSMUST00000020017ENSMUSG00000038214ENSMUST00000040147ENSMUST00000167488ENSMUSG00000038240ENSMUST00000095725ENSMUST00000159139ENSMUST00000160108ENSMUST00000160823ENSMUST00000162008ENSMUST00000162758ENSMUSG00000045886ENSMUST00000057649ENSMUSG00000047139ENSMUST00000058714ENSMUSG00000075184ENSMUST00000099888ENSMUSG00000094852ENSMUST00000182071
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00085F_0001ENSG00000112297ENST00000369066ENST00000457437ENST00000487681ENSG00000130347ENST00000369063ENST00000493619ENST00000498091ENST00000539449ENSG00000130348ENST00000369044ENST00000369046ENSG00000130349ENST00000311381ENST00000405204ENST00000489790ENSG00000178409ENST00000369042ENST00000429433ENSG00000207577ENST00000384845ENSG00000216977ENST00000406094ENSG00000229654ENST00000424162ENSG00000235142ENST00000415714ENST00000427903ENST00000428750ENST00000430094ENST00000433965ENST00000436659ENST00000602621ENST00000602934ENST00000606430ENST00000607090ENSG00000272398ENST00000606017ENST00000610952ENST00000615659ENST00000619133ENST00000619869ENST00000620405CIL_00085F_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112297 ENST00000369066 4.098±0.00 N/A 1.497±0.00 0.215±0.00 4.034±0.87 5.679±3.00 0.331±0.15 3.098±1.48 1.926±0.96 3.197±0.39 0.151±0.08 2.650±2.11 9.605±3.74 4.981±0.16
ENST00000457437 N/A N/A 3.644±0.00 N/A N/A N/A N/A N/A N/A N/A 0.267±0.00 N/A N/A N/A
ENST00000487681 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.624±0.00 N/A N/A N/A
ENSG00000130347 ENST00000369063 1.122±0.00 3.233±0.00 1.413±0.00 3.626±0.65 2.781±0.00 2.465±1.35 4.324±2.01 3.359±1.74 2.473±1.25 0.272±0.07 1.789±0.35 3.018±1.45 2.452±0.87 5.185±0.64
ENST00000493619 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.820±0.00 N/A N/A N/A N/A
ENST00000498091 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A
ENST00000539449 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.200±0.00 N/A N/A N/A N/A
ENSG00000130348 ENST00000369044 N/A 0.996±0.00 2.192±0.00 1.215±0.00 1.062±0.00 1.483±0.00 2.504±0.00 1.320±0.00 2.415±0.00 1.424±0.00 0.823±0.00 1.269±0.00 N/A N/A
ENST00000369046 1.564±0.00 3.825±0.00 1.004±0.00 1.807±0.65 1.330±0.71 1.431±0.39 2.169±1.28 2.367±1.59 1.656±0.66 0.985±0.21 2.254±0.20 3.674±0.73 2.103±0.32 2.346±0.36
ENST00000467262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000130349 ENST00000311381 4.142±0.00 6.171±0.00 1.044±0.00 5.426±1.48 6.202±4.48 4.562±4.13 5.618±4.10 12.936±0.00 3.684±2.26 0.756±0.00 3.088±2.02 9.117±5.05 7.189±3.25 8.803±1.83
ENST00000405204 N/A 1.068±0.00 N/A 0.626±0.00 N/A N/A 1.917±0.00 2.733±1.07 0.624±0.00 1.054±0.00 0.862±0.00 3.126±0.00 0.693±0.00 1.361±0.00
ENST00000489790 N/A 2.534±0.00 0.380±0.00 1.434±0.00 N/A N/A N/A N/A 0.961±0.00 N/A 0.554±0.00 3.039±2.19 N/A 2.214±0.00
ENSG00000178409 ENST00000369042 0.548±0.00 1.056±0.00 0.076±0.00 0.570±0.00 0.566±0.11 0.590±0.07 0.219±0.20 0.712±0.00 0.387±0.28 0.430±0.18 0.515±0.44 1.099±0.62 0.402±0.21 0.927±0.38
ENST00000429433 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.858±0.00 N/A 0.507±0.00
ENSG00000207577 ENST00000384845 N/A N/A N/A N/A N/A N/A N/A N/A 0.243±0.00 N/A N/A N/A N/A N/A
ENSG00000216977 ENST00000406094 0.028±0.00 0.296±0.00 N/A N/A 0.105±0.08 0.082±0.00 0.028±0.00 0.515±0.34 1.516±0.00 0.313±0.00 0.457±0.00 0.909±0.75 N/A 0.180±0.10
ENSG00000229654 ENST00000424162 N/A 0.034±0.00 N/A 0.033±0.00 0.033±0.00 N/A N/A 0.171±0.00 N/A N/A N/A 0.040±0.00 N/A 0.080±0.00
ENSG00000235142 ENST00000415714 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A
ENST00000418134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.045±0.00 N/A N/A
ENST00000428750 N/A N/A N/A N/A N/A 0.287±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430094 N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A
ENST00000433965 N/A N/A N/A N/A N/A N/A N/A 11.868±0.00 19.371±0.00 N/A 0.089±0.00 0.236±0.00 0.143±0.00 0.049±0.00
ENST00000436659 N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A 0.031±0.00 N/A 0.043±0.01
ENST00000602621 N/A N/A 5.049±0.00 N/A 0.017±0.00 N/A N/A N/A 3.505±0.00 N/A N/A 0.017±0.00 N/A N/A
ENST00000602934 N/A 0.022±0.00 6.523±0.00 0.013±0.00 0.021±0.00 N/A 0.085±0.00 N/A 1.395±0.00 0.019±0.00 N/A 0.085±0.01 0.068±0.02 0.162±0.00
ENST00000606430 0.045±0.00 0.142±0.00 N/A 0.024±0.00 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A
ENST00000607090 N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A 0.261±0.00 N/A N/A
ENST00000607758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000272398 ENST00000606017 8.208±0.00 26.347±0.00 75.958±0.00 6.776±2.44 40.102±4.25 144.339±95.19 0.384±0.28 287.083±283.93 7.050±1.79 36.712±27.20 0.314±0.16 69.546±33.00 51.082±16.02 13.773±0.00
ENST00000610952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.807±0.59 N/A N/A N/A
ENST00000615659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.306±0.00
ENST00000619133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.633±0.00 N/A
ENST00000619869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.843±0.00
ENST00000620405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.741±0.00 30.544±0.00 0.387±0.00
ENST00000621311 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019797 ENSMUST00000019932 4.969±1.37 8.152±2.79 9.731±0.41 13.354±6.97 3.492±0.85 4.258±0.90 14.159±2.23 7.023±2.92 5.233±3.63 2.931±1.32 31.734±2.02 10.208±9.48 35.257±16.99 18.583±18.24
ENSMUST00000126463 N/A 3.513±0.39 N/A N/A 2.601±0.36 N/A N/A N/A N/A N/A N/A 4.336±0.46 N/A N/A
ENSMUST00000147196 N/A N/A N/A N/A N/A N/A N/A N/A 2.719±0.32 N/A N/A N/A N/A N/A
ENSMUST00000152926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000019863 ENSMUST00000020012 5.408±0.53 4.290±0.61 4.849±0.36 5.815±1.62 4.606±0.48 6.792±0.48 12.781±0.41 8.291±0.43 3.758±1.13 3.428±0.59 6.622±1.25 4.257±0.95 3.798±1.10 5.245±1.70
ENSMUST00000146937 N/A N/A 1.131±0.00 1.592±0.00 N/A N/A N/A N/A N/A N/A N/A 1.208±0.17 1.999±0.00 N/A
ENSMUST00000154405 1.187±0.00 0.905±0.31 0.749±0.26 1.652±0.76 1.028±0.28 1.255±0.32 N/A N/A 0.678±0.16 1.026±0.07 0.727±0.00 1.118±0.45 0.765±0.20 0.429±0.21
ENSMUSG00000019864 ENSMUST00000054418 5.343±0.58 3.120±0.35 4.821±0.02 3.817±1.63 5.607±1.79 3.633±1.73 19.769±4.10 12.141±0.80 5.458±1.38 2.840±0.77 6.853±0.87 2.194±0.85 2.960±1.10 3.326±0.00
ENSMUST00000105492 2.259±0.67 3.137±0.51 N/A 1.342±0.00 3.329±1.66 2.628±0.69 6.074±1.44 4.643±0.81 2.749±1.64 1.430±0.00 N/A 2.007±0.81 N/A N/A
ENSMUSG00000019866 ENSMUST00000020017 1.069±0.22 0.443±0.12 4.567±0.24 0.041±0.00 3.422±1.63 6.656±1.66 0.433±0.08 1.656±0.39 0.982±0.69 2.703±0.94 0.392±0.11 0.873±0.27 1.743±1.33 0.403±0.06
ENSMUSG00000038214 ENSMUST00000040147 1.417±0.00 1.186±0.70 N/A N/A N/A N/A N/A N/A 1.011±0.00 N/A N/A 2.717±1.10 0.707±0.00 0.812±0.64
ENSMUST00000167488 1.846±0.94 1.448±0.64 0.981±0.49 2.462±1.53 1.660±0.31 1.908±0.17 1.113±0.43 1.715±0.17 1.466±0.58 1.924±0.14 1.234±0.15 3.091±1.16 3.628±0.97 1.167±0.81
ENSMUSG00000038240 ENSMUST00000095725 4.409±1.57 2.886±0.49 5.538±0.32 4.299±1.46 2.573±1.72 6.789±1.45 6.763±1.43 9.225±0.97 3.549±1.18 2.204±0.96 6.785±0.96 3.994±1.63 3.070±1.08 1.422±0.66
ENSMUST00000159139 N/A 13.559±1.76 N/A N/A 2.302±0.00 8.078±1.51 N/A N/A N/A 2.255±0.36 N/A 4.991±2.17 N/A N/A
ENSMUST00000160108 N/A N/A N/A N/A N/A 4.977±0.00 N/A N/A 1.426±0.00 N/A N/A 1.016±0.00 N/A N/A
ENSMUST00000160823 N/A N/A N/A 0.375±0.00 0.176±0.00 N/A N/A N/A N/A 0.297±0.00 N/A N/A N/A 0.010±0.00
ENSMUST00000162008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.999±0.00 2.155±0.00 N/A
ENSMUST00000162758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.671±0.00 N/A N/A
ENSMUSG00000045886 ENSMUST00000057649 12.316±6.94 4.725±1.08 2.287±0.72 6.068±2.58 14.144±7.08 4.266±2.14 6.210±1.22 5.372±3.52 3.383±2.12 5.435±1.51 0.665±0.37 10.722±7.50 0.888±0.11 27.503±4.94
ENSMUSG00000047139 ENSMUST00000058714 117.841±112.66 19.534±4.73 53.157±0.29 276.128±205.66 183.460±53.24 381.759±80.92 12.057±8.71 119.593±14.74 435.176±484.42 210.845±23.56 96.634±8.62 121.526±49.01 13.680±8.06 5.575±3.28
ENSMUSG00000075184 ENSMUST00000099888 0.018±0.00 N/A N/A 0.016±0.00 0.040±0.00 0.054±0.00 0.171±0.12 0.021±0.00 6.219±3.60 0.031±0.01 0.018±0.01 N/A 0.039±0.03 0.103±0.07
ENSMUSG00000094852 ENSMUST00000182071 0.061±0.03 0.072±0.00 0.015±0.01 0.001±0.00 0.202±0.21 0.068±0.00 0.071±0.03 0.066±0.04 0.026±0.03 N/A 0.047±0.02 0.150±0.00 0.008±0.00 0.033±0.00

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