C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 4930430F08 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054471 4930430F08Rik-201 ENSMUSG00000046567 10090 - 10:100572274-100589259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054471
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054471 1.604±0.75 5.785±3.17 3.451±0.09 2.670±0.30 1.746±0.47 1.725±0.74 0.998±0.20 2.068±0.85 3.667±1.91 2.661±0.64 1.843±0.35 2.481±1.11 1.538±0.63 4.977±1.43

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IGI hematopoietic progenitor cell differentiation
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309041 CEP290-201 protein_coding Homo_sapiens 0 248
ENST00000356891 C12orf29-001 protein_coding Homo_sapiens 0 1009
ENST00000453037 C12orf29-010 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000514668 RP11-101B14.1-001 processed_pseudogene Homo_sapiens 0 479
ENST00000547468 C12orf29-008 retained_intron Homo_sapiens 0 752
ENST00000547691 CEP290-005 protein_coding Homo_sapiens 0 248
ENST00000548511 C12orf29-002 retained_intron Homo_sapiens 0 368
ENST00000548757 C12orf29-006 processed_transcript Homo_sapiens 0 676
ENST00000549345 C12orf29-007 processed_transcript Homo_sapiens 0 407
ENST00000550333 C12orf29-003 nonsense_mediated_decay Homo_sapiens 0 760
ENST00000552121 C12orf29-004 nonsense_mediated_decay Homo_sapiens 0 228
ENST00000552803 C12orf29-009 retained_intron Homo_sapiens 0 479
ENST00000552810 CEP290-001 protein_coding Homo_sapiens 0 248
ENST00000552847 C12orf29-005 nonsense_mediated_decay Homo_sapiens 0 545

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