C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: centrosomal protein 290kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000552810 CEP290-001 ENSG00000198707 9606 - 12:88049020-88142216 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartLiverOvaryPlacentaTestisENST00000552810
Transcript ID Adrenal Bladder Brain Breast Heart Liver Ovary Placenta Testis
ENST00000552810 0.634±0.00 0.809±0.00 1.182±0.16 1.234±0.00 0.631±0.20 0.767±0.00 1.028±0.43 1.500±0.00 2.049±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000215 CIL_000215_0002 CGP 12:88033846-88142216
CIL_000212 CIL_000212_0002 CGP 12:88049014-88199887

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0000930 IDA gamma-tubulin complex
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005829 IDA cytosol
GO:0007163 IEA establishment or maintenance of cell polarity
GO:0015031 ISS protein transport
GO:0016020 IDA membrane
GO:0030814 IEA regulation of cAMP metabolic process
GO:0030902 ISS hindbrain development
GO:0030916 ISS otic vesicle formation
GO:0032391 ISS photoreceptor connecting cilium
GO:0034451 IDA centriolar satellite
GO:0036038 ISS TCTN-B9D complex
GO:0036064 IEA ciliary basal body
GO:0042384 ISS cilium assembly
GO:0042462 ISS eye photoreceptor cell development
GO:0043234 IDA protein complex
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048793 ISS pronephros development
GO:0060041 IEA retina development in camera-type eye
GO:0060271 ISS cilium morphogenesis
GO:0070201 IMP regulation of establishment of protein localization
GO:0090316 IMP positive regulation of intracellular protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164751 Cep290-201 protein_coding Mus_musculus 0 8004
ENSMUST00000054471 4930430F08Rik-201 protein_coding Mus_musculus 0 248

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