C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NK1 transcription factor related, locus 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054562 Nkx1-2-001 ENSMUSG00000048528 10090 - 7:132594878-132599637 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000054562
Transcript ID Adipose Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000054562 0.035±0.03 0.140±0.10 0.037±0.01 0.019±0.01 0.020±0.00 0.015±0.01 0.020±0.01 0.005±0.00 0.036±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WI CIL_0002WI_0002 CGP 7:129591863-133123350
CIL_0001BE CIL_0001BE_0002 CGP 7:130162451-133123350
CIL_00084V CIL_00084V_0002 VISTA 7:132507589-133108550
CIL_00011N CIL_00011N_0002 CGP 7:132557475-132599637
CIL_0001V3 CIL_0001V3_0002 CGP 7:132594878-132706420

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000026025 CABZ01067175.1-201 protein_coding Danio_rerio 0.00000000005 75
ENST00000451024 NKX1-2-001 protein_coding Homo_sapiens 0 603

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