C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: NK1 homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451024 NKX1-2-001 ENSG00000229544 9606 - 10:124447023-124450184 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000451024
Transcript ID Placenta
ENST00000451024 0.151±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011N CIL_00011N_0001 CGP 10:124397303-124450184
CIL_00084V CIL_00084V_0001 VISTA 10:124437964-125038882
CIL_0001V3 CIL_0001V3_0001 CGP 10:124447023-124617888

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054562 Nkx1-2-001 protein_coding Mus_musculus 0 603
ENSMUST00000173348 Nkx1-1-001 protein_coding Mus_musculus 0 233
ENSMUST00000142312 Hoxd11-001 protein_coding Mus_musculus 0.000002 58
ENSMUST00000048086 Hoxd11-002 processed_transcript Mus_musculus 0.000002 58

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