C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: orofacial cleft 1 candidate 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054635 Ofcc1-201 ENSMUSG00000047094 10090 - 13:40001882-40288011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054635
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054635 0.023±0.01 0.025±0.00 0.022±0.01 0.074±0.04 0.023±0.01 0.002±0.00 0.016±0.00 0.013±0.00 0.041±0.02 0.031±0.03 0.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NC CIL_0007NC_0002 UCNEbase 13:38708565-40726483
CIL_000381 CIL_000381_0002 CGP 13:38932140-40288011

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005829 IDA cytosol
GO:0008150 ND biological_process
GO:0015630 IDA microtubule cytoskeleton
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316020 OFCC1-201 protein_coding Homo_sapiens 0 375
ENST00000460066 OFCC1-007 processed_transcript Homo_sapiens 0 392
ENST00000460363 OFCC1-001 protein_coding Homo_sapiens 0 390
ENST00000466385 OFCC1-008 processed_transcript Homo_sapiens 0 344
ENST00000469426 OFCC1-005 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000472329 OFCC1-003 processed_transcript Homo_sapiens 0 394
ENST00000486246 OFCC1-009 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000487015 OFCC1-002 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000491508 OFCC1-006 protein_coding Homo_sapiens 0 394
ENST00000492094 OFCC1-021 nonsense_mediated_decay Homo_sapiens 0 394
ENST00000492169 OFCC1-010 protein_coding Homo_sapiens 0 302
ENST00000611763 OFCC1-202 protein_coding Homo_sapiens 0 326
ENST00000622909 OFCC1-203 protein_coding Homo_sapiens 0 350

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