C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hypocretin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055083 Hcrt-001 ENSMUSG00000045471 10090 - 11:100761691-100762931 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000055083
Transcript ID Adipose Bladder Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000055083 0.110±0.00 0.072±0.00 3.930±5.12 0.172±0.10 0.201±0.02 0.043±0.02 0.253±0.07 0.196±0.00 0.996±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002J4 CIL_0002J4_0002 CGP 11:100740376-100762931
CIL_0006DQ CIL_0006DQ_0002 CGP 11:100761069-100770957

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0007200 IEA phospholipase C-activating G-protein coupled receptor signaling pathway
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007205 IEA protein kinase C-activating G-protein coupled receptor signaling pathway
GO:0007218 IEA neuropeptide signaling pathway
GO:0008156 IEA negative regulation of DNA replication
GO:0030054 IEA cell junction
GO:0030141 IEA secretory granule
GO:0031771 IEA type 1 hypocretin receptor binding
GO:0031772 IEA type 2 hypocretin receptor binding
GO:0042755 IEA eating behavior
GO:0043267 IEA negative regulation of potassium ion transport
GO:0045202 IEA synapse
GO:0046928 IEA regulation of neurotransmitter secretion
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051928 IEA positive regulation of calcium ion transport
GO:0051970 IEA negative regulation of transmission of nerve impulse
GO:0051971 IEA positive regulation of transmission of nerve impulse
GO:0060079 IEA regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293330 HCRT-001 protein_coding Homo_sapiens 0 353

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