C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: catsper channel auxiliary subunit beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055156 Catsperb-201 ENSMUSG00000047014 10090 + 12:101404673-101626009 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLungOvaryPlacentaTestisENSMUST00000055156
Transcript ID Brain Heart Lung Ovary Placenta Testis
ENSMUST00000055156 0.006±0.00 0.017±0.00 0.019±0.00 0.005±0.00 0.004±0.00 10.657±4.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AH CIL_0000AH_0002 CGP 12:101039409-101626009
CIL_000538 CIL_000538_0002 CGP 12:101404673-101718523

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005929 IDA cilium
GO:0007275 IEA multicellular organismal development
GO:0034702 TAS ion channel complex
GO:0036128 IDA CatSper complex
GO:0048240 TAS sperm capacitation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256343 CATSPERB-001 protein_coding Homo_sapiens 0 590
ENST00000557036 CATSPERB-002 nonsense_mediated_decay Homo_sapiens 0 590
ENST00000619027 CATSPERB-201 protein_coding Homo_sapiens 0 590

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