C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000AH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100796-ENSG00000133962 CGP 9606 14:91457611-91780707
GeneTranscriptPositionBiotype
ENSG00000100796 (SMEK1)
SMEK homolog 1, suppressor of mek1 (Dictyostelium) 		ENST00000554308 (SMEK1-005) 91461381-91509654 nonsense_mediated_decay
ENST00000554390 (SMEK1-002) 91462054-91510480 non_stop_decay
ENST00000554511 (SMEK1-010) 91485632-91510300 protein_coding
ENST00000554574 (SMEK1-008) 91474641-91481998 retained_intron
ENST00000554684 (SMEK1-001) 91457611-91510144 protein_coding
ENST00000554943 (SMEK1-007) 91458008-91509763 protein_coding
ENST00000555029 (SMEK1-011) 91473349-91509647 protein_coding
ENST00000555462 (SMEK1-003) 91458139-91510478 protein_coding
ENST00000555470 (SMEK1-012) 91475820-91481873 protein_coding
ENST00000555718 (SMEK1-013) 91458859-91466355 processed_transcript
ENST00000557018 (SMEK1-009) 91482040-91510554 protein_coding
ENST00000557382 (SMEK1-014) 91458330-91461684 retained_intron
ENSG00000133962 (CATSPERB)
catsper channel auxiliary subunit beta 		ENST00000256343 (CATSPERB-001) 91580774-91732086 protein_coding
ENST00000553329 (CATSPERB-003) 91704575-91732059 protein_coding
ENST00000553676 (CATSPERB-005) 91723137-91780688 protein_coding
ENST00000554560 (CATSPERB-004) 91723058-91780707 protein_coding
ENST00000556429 (CATSPERB-007) 91589579-91592552 retained_intron
ENST00000556661 (CATSPERB-006) 91723136-91780688 protein_coding
ENST00000556901 (CATSPERB-008) 91635524-91646235 retained_intron
ENST00000557036 (CATSPERB-002) 91580696-91669930 nonsense_mediated_decay
ENSG00000165929 (TC2N)
tandem C2 domains, nuclear 		ENST00000340892 (TC2N-004) 91780179-91836440 protein_coding
ENST00000360594 (TC2N-003) 91780955-91836447 protein_coding
ENST00000435962 (TC2N-001) 91779751-91867529 protein_coding
ENST00000554424 (TC2N-006) 91812016-91813828 retained_intron
ENST00000555302 (TC2N-005) 91866275-91867536 processed_transcript
ENST00000556018 (TC2N-002) 91782823-91836526 protein_coding
ENST00000556590 (TC2N-007) 91782927-91798998 protein_coding
ENSG00000258774 (NANOGP7)
Nanog homeobox pseudogene 7 		ENST00000554450 (NANOGP7-001) 91604402-91605319 transcribed_processed_pseudogene
ENSG00000258962 (RP11-747H7.1)
 ENST00000556233 (RP11-747H7.1-001) 91709111-91710617 processed_pseudogene
ENSG00000260711 (RP11-747H7.3)
 ENST00000565058 (RP11-747H7.3-001) 91752856-91759798 sense_intronic
ENSG00000268295 (POLR3GP1)
polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene 1 		ENST00000594073 (POLR3GP1-001) 91603173-91603433 transcribed_processed_pseudogene
ENSG00000278342 (RP11-248B24.5)
 ENST00000497098 (RP11-248B24.5-001) 91554410-91554503 unprocessed_pseudogene
ENSG00000279286 (RP11-248B24.1)
 ENST00000623187 (RP11-248B24.1-001) 91572444-91575271 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0000AH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041846-ENSMUSG00000047014 CGP 10090 12:101039409-101626009
GeneTranscriptPositionBiotype
ENSMUSG00000041846 (Smek1)
SMEK homolog 1, suppressor of mek1 (Dictyostelium) 		ENSMUST00000048305 (Smek1-201) 101039409-101083702 protein_coding
ENSMUST00000163095 (Smek1-202) 101039409-101083702 protein_coding
ENSMUSG00000047014 (Catsperb)
catsper channel auxiliary subunit beta 		ENSMUST00000055156 (Catsperb-201) 101404673-101626009 protein_coding
ENSMUSG00000092054 (Kif4-ps)
kinesin family member 4, pseudogene 		ENSMUST00000184686 (Kif4-ps-001) 101145614-101149278 transcribed_processed_pseudogene
ENSMUST00000185083 (Kif4-ps-002) 101149107-101149758 processed_transcript
ENSMUSG00000097121 (D130020L05Rik)
RIKEN cDNA D130020L05 gene 		ENSMUST00000180800 (D130020L05Rik-201) 101082481-101088927 lincRNA
ENSMUSG00000098167 (Gm18848)
predicted gene, 18848 		ENSMUST00000182069 (Gm18848-001) 101205723-101206514 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AH_0001ENSG00000100796ENST00000554308ENST00000554390ENST00000554511ENST00000554574ENST00000554684ENST00000554943ENST00000555029ENST00000555462ENST00000555470ENST00000555718ENST00000557018ENST00000557382ENSG00000133962ENST00000256343ENST00000553329ENST00000553676ENST00000554560ENST00000556429ENST00000556661ENST00000556901ENST00000557036ENSG00000165929ENST00000340892ENST00000360594ENST00000435962ENST00000554424ENST00000555302ENST00000556018ENST00000556590ENSG00000258774ENST00000554450ENSG00000258962ENST00000556233ENSG00000260711ENST00000565058ENSG00000268295ENST00000594073ENSG00000278342ENST00000497098ENSG00000279286ENST00000623187CIL_0000AH_0002ENSMUSG00000041846ENSMUST00000048305ENSMUST00000163095ENSMUSG00000047014ENSMUST00000055156ENSMUSG00000092054ENSMUST00000184686ENSMUST00000185083ENSMUSG00000097121ENSMUST00000180800ENSMUSG00000098167ENSMUST00000182069
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AH_0001ENSG00000100796ENST00000554308ENST00000554390ENST00000554684ENST00000554943ENST00000555462ENST00000555718ENST00000557382ENSG00000133962ENST00000256343ENSG00000165929ENST00000340892ENST00000360594ENST00000435962ENST00000555302ENST00000556018ENST00000556590ENSG00000258774ENST00000554450ENSG00000258962ENST00000556233ENSG00000260711ENST00000565058ENSG00000268295ENST00000594073ENSG00000278342ENST00000497098ENSG00000279286ENST00000623187CIL_0000AH_0002ENSMUSG00000041846ENSMUST00000048305ENSMUST00000163095ENSMUSG00000047014ENSMUST00000055156ENSMUSG00000092054ENSMUST00000184686ENSMUST00000185083ENSMUSG00000097121ENSMUST00000180800ENSMUSG00000098167ENSMUST00000182069
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100796 ENST00000554308 N/A N/A N/A N/A N/A 1.999±0.00 N/A 1.541±0.00 N/A N/A 1.245±0.00 N/A N/A N/A
ENST00000554390 N/A N/A 2.524±0.00 2.899±0.00 6.580±0.00 4.474±0.00 1.448±0.00 2.499±0.00 2.361±0.00 6.575±0.00 1.484±0.00 7.413±3.60 8.376±5.74 30.459±0.00
ENST00000554511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554574 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554684 3.447±0.00 2.815±0.00 N/A 2.210±0.26 2.836±0.00 2.082±0.07 4.026±0.00 5.390±3.93 2.262±1.21 3.736±0.00 N/A 5.534±2.64 3.308±0.00 7.637±0.00
ENST00000554943 1.969±0.00 4.991±0.00 N/A 1.168±0.19 2.999±0.06 2.740±0.00 1.778±1.24 N/A 2.050±0.00 2.092±0.17 1.283±0.87 3.257±1.32 4.692±1.01 9.262±3.47
ENST00000555029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555462 2.711±0.00 4.033±0.00 2.148±0.00 2.008±0.00 2.806±0.00 2.448±0.26 N/A 4.534±0.00 1.251±0.00 4.598±0.00 1.490±0.39 4.840±2.68 6.471±0.00 9.847±6.26
ENST00000555470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.769±0.00 N/A N/A N/A
ENST00000557018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557382 8.790±0.00 22.989±0.00 N/A 10.385±0.00 8.131±0.00 13.017±0.00 8.426±0.00 10.524±4.36 6.115±0.00 10.593±0.00 3.816±1.76 20.786±0.00 N/A 18.712±0.00
ENSG00000133962 ENST00000256343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.405±0.00
ENST00000553329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165929 ENST00000340892 1.361±0.00 1.412±0.00 0.403±0.00 0.297±0.00 1.003±0.00 4.144±0.00 0.506±0.14 1.165±0.00 0.662±0.51 4.767±0.00 0.638±0.00 1.247±0.59 0.228±0.19 1.789±0.46
ENST00000360594 1.606±0.00 1.839±0.00 N/A 0.272±0.00 0.836±0.00 N/A 0.435±0.00 0.436±0.35 0.063±0.00 N/A N/A 2.287±1.55 0.437±0.05 0.952±0.00
ENST00000435962 0.942±0.00 1.232±0.00 0.696±0.00 0.617±0.00 1.722±0.40 4.410±2.01 0.561±0.00 0.355±0.00 3.471±0.00 5.094±1.72 0.251±0.00 0.409±0.00 N/A 1.334±0.00
ENST00000554424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555302 N/A N/A N/A N/A N/A N/A N/A 0.428±0.00 N/A N/A N/A N/A N/A N/A
ENST00000556018 3.176±0.00 2.503±0.00 N/A 0.247±0.00 N/A 6.384±0.00 N/A N/A 2.509±0.00 N/A 0.501±0.00 2.638±0.00 0.408±0.16 3.914±0.36
ENST00000556590 N/A N/A N/A N/A N/A N/A N/A 0.371±0.00 N/A N/A N/A 4.767±0.00 1.186±0.00 5.192±0.00
ENSG00000258774 ENST00000554450 N/A N/A N/A N/A 0.250±0.15 N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00
ENSG00000258962 ENST00000556233 N/A 0.016±0.00 N/A N/A 0.526±0.00 0.166±0.00 0.046±0.00 N/A 0.041±0.00 0.082±0.00 N/A 0.065±0.00 N/A 0.023±0.00
ENSG00000260711 ENST00000565058 0.182±0.00 0.729±0.00 0.239±0.00 0.077±0.00 1.014±0.00 0.706±0.48 0.143±0.05 0.250±0.04 0.174±0.15 0.623±0.17 0.030±0.00 0.311±0.10 0.021±0.01 0.188±0.01
ENSG00000268295 ENST00000594073 N/A N/A N/A N/A 0.212±0.00 N/A 0.085±0.00 N/A N/A N/A N/A 0.348±0.00 0.275±0.00 0.173±0.00
ENSG00000278342 ENST00000497098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.315±0.00 N/A N/A
ENSG00000279286 ENST00000623187 0.057±0.00 0.086±0.00 0.088±0.00 0.040±0.01 0.189±0.13 0.209±0.14 0.047±0.01 0.035±0.00 0.039±0.00 0.090±0.01 N/A 0.053±0.04 0.030±0.00 0.272±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041846 ENSMUST00000048305 3.317±1.28 N/A 5.657±0.60 8.061±1.10 3.296±0.81 2.224±0.61 2.092±0.43 3.461±0.50 6.291±2.39 3.347±0.55 2.638±0.95 4.465±3.11 10.134±2.84 4.822±1.12
ENSMUST00000163095 0.682±0.00 N/A 1.719±0.11 2.206±0.47 0.887±0.29 1.819±0.00 0.747±0.00 1.331±0.08 2.146±0.32 0.844±0.00 0.741±0.15 4.399±0.05 2.554±0.00 1.406±0.00
ENSMUSG00000047014 ENSMUST00000055156 N/A N/A N/A 0.006±0.00 N/A N/A 0.017±0.00 N/A N/A 0.019±0.00 N/A 0.005±0.00 0.004±0.00 10.657±4.81
ENSMUSG00000092054 ENSMUST00000184686 N/A N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.389±1.28
ENSMUST00000185083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.542±0.45
ENSMUSG00000097121 ENSMUST00000180800 2.014±0.35 1.854±0.45 3.391±0.54 4.133±0.11 N/A N/A 0.612±0.00 1.208±0.01 3.725±0.58 1.142±0.00 N/A 9.116±0.00 4.175±0.34 N/A
ENSMUSG00000098167 ENSMUST00000182069 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.204±0.12

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