C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000538_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133962-ENSG00000165929 CGP 9606 14:91580696-91867536
GeneTranscriptPositionBiotype
ENSG00000133962 (CATSPERB)
catsper channel auxiliary subunit beta 		ENST00000256343 (CATSPERB-001) 91580774-91732086 protein_coding
ENST00000553329 (CATSPERB-003) 91704575-91732059 protein_coding
ENST00000553676 (CATSPERB-005) 91723137-91780688 protein_coding
ENST00000554560 (CATSPERB-004) 91723058-91780707 protein_coding
ENST00000556429 (CATSPERB-007) 91589579-91592552 retained_intron
ENST00000556661 (CATSPERB-006) 91723136-91780688 protein_coding
ENST00000556901 (CATSPERB-008) 91635524-91646235 retained_intron
ENST00000557036 (CATSPERB-002) 91580696-91669930 nonsense_mediated_decay
ENSG00000165929 (TC2N)
tandem C2 domains, nuclear 		ENST00000340892 (TC2N-004) 91780179-91836440 protein_coding
ENST00000360594 (TC2N-003) 91780955-91836447 protein_coding
ENST00000435962 (TC2N-001) 91779751-91867529 protein_coding
ENST00000554424 (TC2N-006) 91812016-91813828 retained_intron
ENST00000555302 (TC2N-005) 91866275-91867536 processed_transcript
ENST00000556018 (TC2N-002) 91782823-91836526 protein_coding
ENST00000556590 (TC2N-007) 91782927-91798998 protein_coding
ENSG00000258774 (NANOGP7)
Nanog homeobox pseudogene 7 		ENST00000554450 (NANOGP7-001) 91604402-91605319 transcribed_processed_pseudogene
ENSG00000258962 (RP11-747H7.1)
 ENST00000556233 (RP11-747H7.1-001) 91709111-91710617 processed_pseudogene
ENSG00000260711 (RP11-747H7.3)
 ENST00000565058 (RP11-747H7.3-001) 91752856-91759798 sense_intronic
ENSG00000268295 (POLR3GP1)
polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene 1 		ENST00000594073 (POLR3GP1-001) 91603173-91603433 transcribed_processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_000538_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047014-ENSMUSG00000021187 CGP 10090 12:101404673-101718523
GeneTranscriptPositionBiotype
ENSMUSG00000021187 (Tc2n)
tandem C2 domains, nuclear 		ENSMUST00000110047 (Tc2n-002) 101646565-101711905 nonsense_mediated_decay
ENSMUST00000160715 (Tc2n-004) 101649033-101709536 protein_coding
ENSMUST00000160830 (Tc2n-003) 101649080-101711573 protein_coding
ENSMUST00000162735 (Tc2n-001) 101645443-101718523 protein_coding
ENSMUSG00000047014 (Catsperb)
catsper channel auxiliary subunit beta 		ENSMUST00000055156 (Catsperb-201) 101404673-101626009 protein_coding
ENSMUSG00000090152 (Gm16285)
predicted gene 16285 		ENSMUST00000162999 (Gm16285-001) 101646186-101646532 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000538_0001ENSG00000133962ENST00000256343ENST00000553329ENST00000553676ENST00000554560ENST00000556429ENST00000556661ENST00000556901ENST00000557036ENSG00000165929ENST00000340892ENST00000360594ENST00000435962ENST00000554424ENST00000555302ENST00000556018ENST00000556590ENSG00000258774ENST00000554450ENSG00000258962ENST00000556233ENSG00000260711ENST00000565058ENSG00000268295ENST00000594073CIL_000538_0002ENSMUSG00000021187ENSMUST00000110047ENSMUST00000160715ENSMUST00000160830ENSMUST00000162735ENSMUSG00000047014ENSMUST00000055156ENSMUSG00000090152ENSMUST00000162999
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000538_0001ENSG00000133962ENST00000256343ENSG00000165929ENST00000340892ENST00000360594ENST00000435962ENST00000555302ENST00000556018ENST00000556590ENSG00000258774ENST00000554450ENSG00000258962ENST00000556233ENSG00000260711ENST00000565058ENSG00000268295ENST00000594073CIL_000538_0002ENSMUSG00000021187ENSMUST00000110047ENSMUST00000160715ENSMUST00000160830ENSMUST00000162735ENSMUSG00000047014ENSMUST00000055156ENSMUSG00000090152ENSMUST00000162999
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000133962 ENST00000256343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.405±0.00
ENST00000553329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165929 ENST00000340892 1.361±0.00 1.412±0.00 0.403±0.00 0.297±0.00 1.003±0.00 4.144±0.00 0.506±0.14 1.165±0.00 0.662±0.51 4.767±0.00 0.638±0.00 1.247±0.59 0.228±0.19 1.789±0.46
ENST00000360594 1.606±0.00 1.839±0.00 N/A 0.272±0.00 0.836±0.00 N/A 0.435±0.00 0.436±0.35 0.063±0.00 N/A N/A 2.287±1.55 0.437±0.05 0.952±0.00
ENST00000435962 0.942±0.00 1.232±0.00 0.696±0.00 0.617±0.00 1.722±0.40 4.410±2.01 0.561±0.00 0.355±0.00 3.471±0.00 5.094±1.72 0.251±0.00 0.409±0.00 N/A 1.334±0.00
ENST00000554424 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555302 N/A N/A N/A N/A N/A N/A N/A 0.428±0.00 N/A N/A N/A N/A N/A N/A
ENST00000556018 3.176±0.00 2.503±0.00 N/A 0.247±0.00 N/A 6.384±0.00 N/A N/A 2.509±0.00 N/A 0.501±0.00 2.638±0.00 0.408±0.16 3.914±0.36
ENST00000556590 N/A N/A N/A N/A N/A N/A N/A 0.371±0.00 N/A N/A N/A 4.767±0.00 1.186±0.00 5.192±0.00
ENSG00000258774 ENST00000554450 N/A N/A N/A N/A 0.250±0.15 N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00
ENSG00000258962 ENST00000556233 N/A 0.016±0.00 N/A N/A 0.526±0.00 0.166±0.00 0.046±0.00 N/A 0.041±0.00 0.082±0.00 N/A 0.065±0.00 N/A 0.023±0.00
ENSG00000260711 ENST00000565058 0.182±0.00 0.729±0.00 0.239±0.00 0.077±0.00 1.014±0.00 0.706±0.48 0.143±0.05 0.250±0.04 0.174±0.15 0.623±0.17 0.030±0.00 0.311±0.10 0.021±0.01 0.188±0.01
ENSG00000268295 ENST00000594073 N/A N/A N/A N/A 0.212±0.00 N/A 0.085±0.00 N/A N/A N/A N/A 0.348±0.00 0.275±0.00 0.173±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021187 ENSMUST00000110047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A 0.150±0.00 1.171±0.59
ENSMUST00000160715 0.560±0.00 N/A 2.496±0.00 0.021±0.00 0.107±0.00 N/A 0.031±0.01 0.233±0.07 0.163±0.12 N/A 0.015±0.00 0.298±0.13 0.257±0.06 1.259±0.00
ENSMUST00000160830 N/A N/A N/A N/A 0.041±0.00 0.327±0.00 N/A N/A 0.044±0.00 0.493±0.00 N/A 0.151±0.00 N/A 1.023±0.30
ENSMUST00000162735 0.124±0.15 0.140±0.09 3.570±0.41 0.041±0.02 0.164±0.10 0.731±0.44 0.023±0.01 0.098±0.06 0.083±0.06 1.655±0.26 0.008±0.00 0.526±0.45 0.118±0.07 0.201±0.05
ENSMUSG00000047014 ENSMUST00000055156 N/A N/A N/A 0.006±0.00 N/A N/A 0.017±0.00 N/A N/A 0.019±0.00 N/A 0.005±0.00 0.004±0.00 10.657±4.81
ENSMUSG00000090152 ENSMUST00000162999 1.256±0.99 N/A N/A N/A 0.555±0.00 N/A 0.393±0.20 0.583±0.07 0.793±0.21 4.181±0.00 N/A N/A N/A N/A

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