C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, shaker-related subfamily, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055168 Kcna1-201 ENSMUSG00000047976 10090 - 6:126636463-126645801 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055168
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055168 0.432±0.07 0.433±0.17 1.071±0.07 1.313±1.35 0.997±0.41 0.715±0.09 0.612±0.35 0.428±0.08 0.006±0.00 0.295±0.19 0.310±0.07 0.106±0.05 0.055±0.06 0.063±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BY CIL_0006BY_0002 CGP 6:126532553-126698192

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0008076 IEA voltage-gated potassium channel complex
GO:0009986 IDA cell surface
GO:0016324 IEA apical plasma membrane
GO:0030425 IDA dendrite
GO:0034765 IEA regulation of ion transmembrane transport
GO:0043025 IDA neuronal cell body
GO:0044224 IDA juxtaparanode region of axon
GO:0051260 IEA protein homooligomerization
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109628 KCNA3 (2 of 2)-201 protein_coding Danio_rerio 0 739
ENST00000280684 KCNA6-001 protein_coding Homo_sapiens 0 281
ENST00000382545 KCNA1-001 protein_coding Homo_sapiens 0 2817
ENST00000433855 GALNT8-201 protein_coding Homo_sapiens 0 281
ENST00000543874 KCNA1-003 processed_transcript Homo_sapiens 0 305

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