C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055296 Polr1a-201 ENSMUSG00000049553 10090 + 6:71909053-71979356 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055296
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055296 7.083±1.87 9.853±3.91 4.441±0.25 5.222±1.12 5.576±1.56 3.816±0.49 7.243±0.35 4.080±0.60 4.595±1.76 3.983±1.38 6.364±0.90 13.621±4.02 6.899±4.04 6.300±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006Y1 CIL_0006Y1_0002 CGP 6:71880648-71979356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IEA nucleolus
GO:0005736 IDA DNA-directed RNA polymerase I complex
GO:0005737 IEA cytoplasm
GO:0006360 IBA transcription from RNA polymerase I promoter
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114501 polr1a-201 protein_coding Danio_rerio 0 217
ENSDART00000123326 polr1a-001 protein_coding Danio_rerio 0 217
ENST00000263857 POLR1A-001 protein_coding Homo_sapiens 0 5262
ENST00000409681 POLR1A-002 protein_coding Homo_sapiens 0 4615
ENST00000462078 POLR1A-008 processed_transcript Homo_sapiens 0 198
ENST00000486964 POLR1A-003 retained_intron Homo_sapiens 0 1022
ENST00000492034 POLR1A-009 processed_transcript Homo_sapiens 0 466
ENST00000496892 POLR1A-010 processed_transcript Homo_sapiens 0 248

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