C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gap junction protein, beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055698 Gjb2-001 ENSMUSG00000046352 10090 - 14:57098600-57104702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055698
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055698 4.375±4.32 6.871±2.03 2.200±0.28 2.403±1.51 0.535±0.20 3.363±0.42 0.071±0.04 39.556±3.79 62.085±54.33 5.595±4.54 0.146±0.17 2.563±1.40 174.619±132.40 0.066±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SK CIL_0003SK_0002 CGP 14:57035608-57104702

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005243 IDA gap junction channel activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005921 IDA gap junction
GO:0005922 IEA connexon complex
GO:0007267 IDA cell-cell signaling
GO:0007565 IEA female pregnancy
GO:0007605 IEA sensory perception of sound
GO:0016021 IEA integral component of membrane
GO:0016328 IEA lateral plasma membrane
GO:0030054 IEA cell junction
GO:0030539 IEA male genitalia development
GO:0032355 IEA response to estradiol
GO:0032570 IEA response to progesterone
GO:0034599 IEA cellular response to oxidative stress
GO:0044752 IEA response to human chorionic gonadotropin
GO:0046697 IEA decidualization
GO:0055085 IDA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000241124 GJB6-001 protein_coding Homo_sapiens 0 392
ENST00000356192 GJB6-004 protein_coding Homo_sapiens 0 392
ENST00000382844 GJB2-002 protein_coding Homo_sapiens 0 913
ENST00000382848 GJB2-001 protein_coding Homo_sapiens 0 924
ENST00000400065 GJB6-002 protein_coding Homo_sapiens 0 392
ENST00000400066 GJB6-003 protein_coding Homo_sapiens 0 392

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