C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: one cut domain, family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056006 Onecut1-001 ENSMUSG00000043013 10090 + 9:74861921-74891781 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000056006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000056006 0.007±0.00 0.014±0.01 0.006±0.00 0.125±0.00 0.050±0.00 0.031±0.01 0.007±0.00 9.538±5.12 0.100±0.04 0.088±0.08 0.074±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K3 CIL_0007K3_0002 UCNEbase 9:74115980-74893866
CIL_0001YL CIL_0001YL_0002 CGP 9:74861921-75032468

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001889 IGI liver development
GO:0001952 IGI regulation of cell-matrix adhesion
GO:0002064 IMP epithelial cell development
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006006 IMP glucose metabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0007492 IMP endoderm development
GO:0009653 IMP anatomical structure morphogenesis
GO:0030154 IMP cell differentiation
GO:0030183 IMP B cell differentiation
GO:0030335 IGI positive regulation of cell migration
GO:0030512 IGI negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031016 IGI pancreas development
GO:0031018 IGI endocrine pancreas development
GO:0042384 IMP cilium assembly
GO:0045165 IGI cell fate commitment
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048536 IMP spleen development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305901 ONECUT1-001 protein_coding Homo_sapiens 0 2579
ENST00000560699 ONECUT1-003 protein_coding Homo_sapiens 0 545
ENST00000561401 ONECUT1-002 processed_transcript Homo_sapiens 0 656
ENST00000570208 ONECUT1-004 nonsense_mediated_decay Homo_sapiens 0 514

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