C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: one cut homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000305901 ONECUT1-001 ENSG00000169856 9606 - 15:52756989-52790012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyOvaryTestisENST00000305901
Transcript ID Brain Colon Heart Kidney Ovary Testis
ENST00000305901 0.017±0.01 0.040±0.00 0.026±0.02 0.044±0.00 0.135±0.00 0.404±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K3 CIL_0007K3_0001 UCNEbase 15:52752889-53754980

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 ISS RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001889 IEA liver development
GO:0001952 IEA regulation of cell-matrix adhesion
GO:0002064 IEA epithelial cell development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006006 IEA glucose metabolic process
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007492 IEA endoderm development
GO:0009653 IEA anatomical structure morphogenesis
GO:0030154 IEA cell differentiation
GO:0030183 IEA B cell differentiation
GO:0030335 IEA positive regulation of cell migration
GO:0030512 IEA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0031016 IEA pancreas development
GO:0031018 TAS endocrine pancreas development
GO:0042384 IEA cilium assembly
GO:0045165 IEA cell fate commitment
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0048536 IEA spleen development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056006 Onecut1-001 protein_coding Mus_musculus 0 2579
ENSMUST00000160499 Onecut1-002 processed_transcript Mus_musculus 0 749
ENSMUST00000051773 Onecut3-001 protein_coding Mus_musculus 0 392

Loading