C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin family member 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056181 Snx21-001 ENSMUSG00000050373 10090 + 2:164785991-164793810 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056181
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056181 5.633±0.71 9.722±1.03 4.646±0.41 3.488±0.65 6.493±0.49 5.975±0.10 3.507±0.91 4.839±0.50 2.658±0.40 7.418±1.15 2.598±0.78 5.103±0.96 3.551±1.16 2.854±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IO CIL_0000IO_0002 CGP 2:164777161-164793816
CIL_00002M CIL_00002M_0002 CGP 2:164785823-164804882

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342644 SNX21-011 protein_coding Homo_sapiens 0 660
ENST00000344780 SNX21-004 processed_transcript Homo_sapiens 0 1290
ENST00000372541 SNX21-006 protein_coding Homo_sapiens 0 806
ENST00000372542 SNX21-003 protein_coding Homo_sapiens 0 1334
ENST00000372547 SNX21-001 retained_intron Homo_sapiens 0 979
ENST00000462307 SNX21-005 protein_coding Homo_sapiens 0 1053
ENST00000465997 SNX21-002 processed_transcript Homo_sapiens 0 610
ENST00000472219 SNX21-012 processed_transcript Homo_sapiens 0 861
ENST00000478230 SNX21-008 processed_transcript Homo_sapiens 0 699
ENST00000486336 SNX21-009 retained_intron Homo_sapiens 0 638
ENST00000491381 SNX21-010 protein_coding Homo_sapiens 0 1306

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