C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 6563
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056396 Gm6563-201 ENSMUSG00000051255 10090 + 19:23675844-23676712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056396 0.428±0.26 0.323±0.00 0.250±0.14 2.530±3.20 0.662±0.42 0.358±0.17 0.483±0.18 0.334±0.16 0.801±0.44 0.552±0.17 0.112±0.06 0.702±0.39 0.829±1.13 1.544±2.19

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 ISS transcription export complex
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006406 ISS mRNA export from nucleus
GO:0006417 IEA regulation of translation
GO:0016607 ISS nuclear speck

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336133 SARNP-002 protein_coding Homo_sapiens 0 867
ENST00000434352 AC073063.10-001 processed_pseudogene Homo_sapiens 0 617
ENST00000546604 SARNP-001 nonsense_mediated_decay Homo_sapiens 0 846
ENST00000546813 RP11-762I7.5-002 nonsense_mediated_decay Homo_sapiens 0.000000001 68
ENST00000546837 RP11-762I7.5-001 protein_coding Homo_sapiens 0 811
ENST00000548593 RP11-762I7.5-003 nonsense_mediated_decay Homo_sapiens 4e-26 122
ENST00000550124 RP11-762I7.5-004 nonsense_mediated_decay Homo_sapiens 0.0000000001 71
ENST00000552080 SARNP-005 protein_coding Homo_sapiens 0 771
ENST00000552207 SARNP-004 retained_intron Homo_sapiens 0 534
ENST00000552719 RP11-762I7.5-005 processed_transcript Homo_sapiens 0.00000000009 71
ENST00000552884 SARNP-003 nonsense_mediated_decay Homo_sapiens 0 597
ENST00000552946 SARNP-006 retained_intron Homo_sapiens 0 231

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