C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gliomedin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056740 Gldn-001 ENSMUSG00000046167 10090 + 9:54286486-54341786 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056740
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056740 0.091±0.00 1.355±0.13 0.054±0.02 0.088±0.02 0.371±0.21 0.048±0.02 0.127±0.06 0.067±0.03 0.009±0.01 0.143±0.07 0.176±0.04 1.359±0.72 0.005±0.00 0.106±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YR CIL_0007YR_0002 VISTA 9:54035032-54637557
CIL_000507 CIL_000507_0003 CGP 9:54165937-54341786
CIL_000506 CIL_000506_0003 CGP 9:54286486-54501760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005581 IEA collagen trimer
GO:0005615 IDA extracellular space
GO:0005886 IDA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0032528 IMP microvillus organization
GO:0034113 IGI heterotypic cell-cell adhesion
GO:0045162 IMP clustering of voltage-gated sodium channels
GO:0086080 IGI protein binding involved in heterotypic cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335449 GLDN-001 protein_coding Homo_sapiens 0 1735
ENST00000396399 GLDN-002 protein_coding Homo_sapiens 0 1417
ENST00000464150 GLDN-003 retained_intron Homo_sapiens 0 224
ENST00000558286 GLDN-004 retained_intron Homo_sapiens 1e-37 161
ENST00000558426 GLDN-008 protein_coding Homo_sapiens 0 497
ENST00000559317 GLDN-009 retained_intron Homo_sapiens 0 222
ENST00000560215 GLDN-006 protein_coding Homo_sapiens 0 455
ENST00000560690 GLDN-005 retained_intron Homo_sapiens 1e-27 128
ENST00000561194 GLDN-007 retained_intron Homo_sapiens 1e-32 147
ENST00000612989 GLDN-201 protein_coding Homo_sapiens 0 1408

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