C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NF-kappaB repressing factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057093 Nkrf-001 ENSMUSG00000044149 10090 - X:36887540-36902899 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057093
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057093 0.960±0.43 0.376±0.18 1.676±0.02 5.318±1.55 0.592±0.14 0.510±0.31 0.510±0.03 0.471±0.15 1.094±0.84 0.752±0.16 0.585±0.05 0.901±0.73 1.034±0.44 0.428±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UR CIL_0001UR_0002 CGP X:36874358-36902899
CIL_0001U3 CIL_0001U3_0002 CGP X:36887540-36991794

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0044822 IEA poly(A) RNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304449 NKRF-002 protein_coding Homo_sapiens 0 4213
ENST00000371527 NKRF-001 protein_coding Homo_sapiens 0 3941
ENST00000487600 NKRF-003 processed_transcript Homo_sapiens 0 348
ENST00000542113 NKRF-201 protein_coding Homo_sapiens 0 3941
ENST00000617452 NKRF-202 protein_coding Homo_sapiens 0 3932

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