C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beta-1,4-N-acetyl-galactosaminyl transferase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057283 B4galnt3-001 ENSMUSG00000041372 10090 - 6:120203094-120294559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLungMuscleOvaryPlacentaTestisENSMUST00000057283
Transcript ID Adrenal Brain Breast Colon Lung Muscle Ovary Placenta Testis
ENSMUST00000057283 2.578±0.74 0.172±0.00 0.216±0.00 16.549±5.85 0.159±0.06 0.120±0.10 0.951±0.49 0.565±0.00 0.490±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TY CIL_0007TY_0002 VISTA 6:119665436-120266145
CIL_0008AW CIL_0008AW_0002 VISTA 6:119874234-120475208
CIL_00083Y CIL_00083Y_0002 VISTA 6:120053928-120655330

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0008376 ISS acetylgalactosaminyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0032580 IEA Golgi cisterna membrane
GO:0033842 IEA N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000266383 B4GALNT3-001 protein_coding Homo_sapiens 0 2813
ENST00000322843 B4GALNT3-008 protein_coding Homo_sapiens 0 1421
ENST00000535680 B4GALNT3-002 retained_intron Homo_sapiens 0 758
ENST00000540836 B4GALNT3-005 retained_intron Homo_sapiens 0 241
ENST00000544638 B4GALNT3-007 processed_transcript Homo_sapiens 0 614

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