C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: scavenger receptor cysteine rich family, 5 domains
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057612 Ssc5d-201 ENSMUSG00000035279 10090 + 7:4925844-4944821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057612
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057612 2.821±0.66 0.503±0.18 3.426±0.09 0.494±0.21 4.581±1.94 3.660±0.87 1.291±0.37 0.290±0.14 0.098±0.05 1.323±0.83 1.781±0.57 2.759±1.22 0.624±0.32 0.309±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X0 CIL_0003X0_0002 CGP 7:4922251-4944821
CIL_0003WF CIL_0003WF_0002 CGP 7:4925844-4964390

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001968 IDA fibronectin binding
GO:0005044 IDA scavenger receptor activity
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0006898 IEA receptor-mediated endocytosis
GO:0006952 IDA defense response
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0031012 IDA extracellular matrix
GO:0042494 IDA detection of bacterial lipoprotein
GO:0043236 IDA laminin binding
GO:0045087 NAS innate immune response
GO:0050829 IDA defense response to Gram-negative bacterium
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0050840 IDA extracellular matrix binding
GO:2000482 IDA regulation of interleukin-8 secretion
GO:2000483 IDA negative regulation of interleukin-8 secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389623 SSC5D-001 protein_coding Homo_sapiens 0 2152
ENST00000587166 SSC5D-003 protein_coding Homo_sapiens 0 2150
ENST00000588254 SSC5D-002 retained_intron Homo_sapiens 0 785
ENST00000594321 SSC5D-005 protein_coding Homo_sapiens 0 335
ENST00000615233 SSC5D-201 protein_coding Homo_sapiens 0 2150

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