C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: scavenger receptor cysteine rich family, 5 domains
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000587166 SSC5D-003 ENSG00000179954 9606 + 19:55488567-55504324 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungMuscleOvaryENST00000587166
Transcript ID Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000587166 0.068±0.00 0.823±0.00 0.864±0.00 0.256±0.00 1.512±0.00 0.200±0.00 0.607±0.00 0.392±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X0 CIL_0003X0_0001 CGP 19:55485004-55519098
CIL_0003WF CIL_0003WF_0001 CGP 19:55488404-55537089

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001968 ISS fibronectin binding
GO:0005044 ISS:IEA scavenger receptor activity
GO:0005615 ISS extracellular space
GO:0005622 ISS intracellular
GO:0005737 IEA cytoplasm
GO:0006898 IEA receptor-mediated endocytosis
GO:0007275 IEA multicellular organismal development
GO:0016020 IEA membrane
GO:0031012 ISS extracellular matrix
GO:0042494 ISS detection of bacterial lipoprotein
GO:0043236 ISS laminin binding
GO:0045087 IEA innate immune response
GO:0050840 ISS extracellular matrix binding
GO:2000483 ISS negative regulation of interleukin-8 secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057612 Ssc5d-201 protein_coding Mus_musculus 0 2150

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