C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small G protein signaling modulator 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000426855 SGSM2-001 ENSG00000141258 9606 + 17:2337514-2381058 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyOvaryPlacentaENST00000426855
Transcript ID Brain Kidney Ovary Placenta
ENST00000426855 8.120±2.93 4.967±3.34 13.207±0.00 5.894±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093G CIL_00093G_0001 VISTA 17:1876478-2477942
CIL_0007RP CIL_0007RP_0001 VISTA 17:1878704-2480995

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IMP:IEA Rab GTPase activator activity
GO:0017137 IPI Rab GTPase binding
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IMP positive regulation of Rab GTPase activity
GO:0033126 IMP positive regulation of GTP catabolic process
GO:0034499 IMP late endosome to Golgi transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057631 Sgsm2-001 protein_coding Mus_musculus 0 3779
ENSMUST00000081799 Sgsm2-002 protein_coding Mus_musculus 0 2069
ENSMUST00000123573 Sgsm2-003 retained_intron Mus_musculus 0 854
ENSDART00000092357 SGSM2-001 protein_coding Danio_rerio 0 499
ENSMUST00000148421 Sgsm2-005 retained_intron Mus_musculus 0 403
ENSMUST00000156287 Sgsm2-004 retained_intron Mus_musculus 0 398
ENSDART00000047841 SGSM1 (1 of 2)-201 protein_coding Danio_rerio 0 327

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