C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB, member RAS oncogene family-like 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058137 Rabl6-001 ENSMUSG00000015087 10090 - 2:25583018-25608521 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058137
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058137 19.564±1.47 45.957±8.82 22.129±1.43 32.359±18.43 20.667±9.46 28.683±2.74 15.226±3.80 23.418±2.13 10.790±4.06 19.271±4.94 34.853±2.02 47.335±8.27 18.105±4.22 17.262±1.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000QL CIL_0000QL_0002 CGP 2:25575416-25608521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007264 IEA small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000113716 rabl6-201 protein_coding Danio_rerio 0 553
ENST00000311502 RABL6-009 protein_coding Homo_sapiens 0 1203
ENST00000357466 RABL6-005 protein_coding Homo_sapiens 0 1158
ENST00000371663 RABL6-201 protein_coding Homo_sapiens 0 1190
ENST00000371671 RABL6-202 protein_coding Homo_sapiens 0 941
ENST00000432853 AC103564.6-001 unprocessed_pseudogene Homo_sapiens 1.99993e-41 174
ENST00000436380 RABL6-001 protein_coding Homo_sapiens 0 669
ENST00000464941 RABL6-010 nonsense_mediated_decay Homo_sapiens 0 953
ENST00000484471 RABL6-007 nonsense_mediated_decay Homo_sapiens 0 1203

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