C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurogenin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058475 Neurog1-201 ENSMUSG00000048904 10090 - 13:56250505-56252163 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverPlacentaTestisENSMUST00000058475
Transcript ID Brain Breast Liver Placenta Testis
ENSMUST00000058475 3.578±2.59 0.016±0.00 0.007±0.00 0.007±0.00 0.484±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083J CIL_00083J_0002 VISTA 13:55859018-56461187
CIL_0005XX CIL_0005XX_0002 CGP 13:56173703-56252163
CIL_0005XW CIL_0005XW_0002 CGP 13:56250505-56296551

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000989 IDA transcription factor binding transcription factor activity
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0022008 IDA neurogenesis
GO:0030182 IMP neuron differentiation
GO:0031536 IMP positive regulation of exit from mitosis
GO:0042472 IMP inner ear morphogenesis
GO:0043025 IDA neuronal cell body
GO:0043204 IDA perikaryon
GO:0045165 IGI cell fate commitment
GO:0045664 IGI regulation of neuron differentiation
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070888 IDA E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314744 NEUROG1-001 protein_coding Homo_sapiens 0 1308

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