C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurogenin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314744 NEUROG1-001 ENSG00000181965 9606 - 5:135534282-135535949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000314744
Transcript ID Brain Testis
ENST00000314744 0.017±0.00 0.240±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083J CIL_00083J_0001 VISTA 5:135133909-135736454
CIL_0005XX CIL_0005XX_0001 CGP 5:135444218-135535949
CIL_0005XW CIL_0005XW_0001 CGP 5:135534282-135579279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000989 ISS transcription factor binding transcription factor activity
GO:0003677 ISS DNA binding
GO:0003682 ISS chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007399 TAS nervous system development
GO:0022008 IEA neurogenesis
GO:0030182 IEA neuron differentiation
GO:0031536 IEA positive regulation of exit from mitosis
GO:0042472 IEA inner ear morphogenesis
GO:0043025 IEA neuronal cell body
GO:0043204 IEA perikaryon
GO:0045165 IEA cell fate commitment
GO:0045664 IEA regulation of neuron differentiation
GO:0045666 ISS positive regulation of neuron differentiation
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0051091 ISS positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070888 ISS E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058475 Neurog1-201 protein_coding Mus_musculus 0 1308

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