C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058579 Ddx28-001 ENSMUSG00000045538 10090 - 8:106009621-106011882 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058579
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058579 6.097±0.36 7.965±1.08 6.669±0.97 6.411±0.77 9.067±2.66 4.380±0.57 2.876±0.37 4.112±0.38 5.993±1.37 4.344±0.47 4.274±0.33 8.499±1.02 4.608±0.51 2.736±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004RT CIL_0004RT_0002 CGP 8:105984944-106053840
CIL_0000DG CIL_0000DG_0002 CGP 8:105991337-106053840
CIL_00006A CIL_00006A_0002 CGP 8:106009621-106130537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0042645 IEA mitochondrial nucleoid
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332395 DDX28-001 protein_coding Homo_sapiens 0 1245
ENST00000565263 DUS2-001 protein_coding Homo_sapiens 2e-32 145

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