C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fanconi anemia, complementation group M
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058889 Fancm-201 ENSMUSG00000055884 10090 + 12:65075606-65132058 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058889
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058889 1.241±0.25 1.875±0.58 0.339±0.05 2.386±0.20 0.977±0.18 0.578±0.09 0.246±0.08 0.586±0.10 1.335±1.23 0.465±0.04 0.163±0.06 1.947±0.59 1.930±1.28 0.690±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005Q7 CIL_0005Q7_0002 CGP 12:65062436-65132058
CIL_00046X CIL_00046X_0002 CGP 12:65075606-65172604

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000712 ISS resolution of meiotic recombination intermediates
GO:0003677 IEA DNA binding
GO:0003682 ISS chromatin binding
GO:0004386 IEA helicase activity
GO:0004518 IEA nuclease activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0031297 ISS replication fork processing
GO:0043240 ISS Fanconi anaemia nuclear complex
GO:0071821 ISS FANCM-MHF complex
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267430 FANCM-001 protein_coding Homo_sapiens 0 1991
ENST00000542564 FANCM-003 protein_coding Homo_sapiens 0 1435
ENST00000553551 FANCM-008 retained_intron Homo_sapiens 0 405
ENST00000554809 FANCM-005 protein_coding Homo_sapiens 0 702
ENST00000555013 FANCM-007 processed_transcript Homo_sapiens 0 283
ENST00000556036 FANCM-002 protein_coding Homo_sapiens 0 1736
ENST00000556250 FANCM-004 protein_coding Homo_sapiens 0 730
ENST00000557110 FANCM-010 nonsense_mediated_decay Homo_sapiens 0 261

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