C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005Q7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100442-ENSG00000187790 CGP 9606 14:45115600-45200890
GeneTranscriptPositionBiotype
ENSG00000185246 (PRPF39)
pre-mRNA processing factor 39 		ENST00000355765 (PRPF39-003) 45084099-45115601 protein_coding
ENST00000424478 (PRPF39-001) 45084128-45115601 nonsense_mediated_decay
ENST00000477626 (PRPF39-002) 45084118-45115601 retained_intron
ENST00000553605 (PRPF39-009) 45084107-45096228 protein_coding
ENST00000554081 (PRPF39-007) 45096198-45116282 nonsense_mediated_decay
ENST00000554429 (PRPF39-006) 45095239-45115601 nonsense_mediated_decay
ENST00000554439 (PRPF39-004) 45095221-45115634 nonsense_mediated_decay
ENST00000554785 (PRPF39-008) 45109732-45115596 retained_intron
ENST00000556353 (PRPF39-013) 45095446-45096866 retained_intron
ENST00000556718 (PRPF39-012) 45109743-45110669 retained_intron
ENST00000556782 (PRPF39-010) 45084118-45095733 retained_intron
ENST00000557477 (PRPF39-011) 45096906-45110176 nonsense_mediated_decay
ENSG00000187790 (FANCM)
Fanconi anemia, complementation group M 		ENST00000267430 (FANCM-001) 45135947-45200887 protein_coding
ENST00000542564 (FANCM-003) 45135954-45200028 protein_coding
ENST00000553551 (FANCM-008) 45198435-45199971 retained_intron
ENST00000554030 (FANCM-006) 45136514-45137959 retained_intron
ENST00000554809 (FANCM-005) 45175958-45200071 protein_coding
ENST00000555013 (FANCM-007) 45180835-45187848 processed_transcript
ENST00000555484 (FANCM-009) 45196454-45200031 protein_coding
ENST00000556036 (FANCM-002) 45135940-45167423 protein_coding
ENST00000556250 (FANCM-004) 45154759-45200890 protein_coding
ENST00000557110 (FANCM-010) 45196172-45199927 nonsense_mediated_decay
CIL_0005Q7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020949-ENSMUSG00000055884 CGP 10090 12:65062436-65132058
GeneTranscriptPositionBiotype
ENSMUSG00000020949 (Fkbp3)
FK506 binding protein 3 		ENSMUST00000021332 (Fkbp3-201) 65062436-65073944 protein_coding
ENSMUSG00000035597 (Prpf39)
PRP39 pre-mRNA processing factor 39 homolog (yeast) 		ENSMUST00000120580 (Prpf39-001) 65036333-65063386 protein_coding
ENSMUST00000129956 (Prpf39-002) 65036366-65063386 nonsense_mediated_decay
ENSMUSG00000055884 (Fancm)
Fanconi anemia, complementation group M 		ENSMUST00000058889 (Fancm-201) 65075606-65132058 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005Q7_0001ENSG00000185246ENST00000355765ENST00000424478ENST00000477626ENST00000553605ENST00000554081ENST00000554429ENST00000554439ENST00000554785ENST00000556353ENST00000556718ENST00000556782ENST00000557477ENSG00000187790ENST00000267430ENST00000542564ENST00000553551ENST00000554030ENST00000554809ENST00000555013ENST00000555484ENST00000556036ENST00000556250ENST00000557110CIL_0005Q7_0002ENSMUSG00000020949ENSMUST00000021332ENSMUSG00000035597ENSMUST00000120580ENSMUST00000129956ENSMUSG00000055884ENSMUST00000058889
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005Q7_0001ENSG00000185246ENST00000355765ENST00000424478ENST00000477626ENST00000554429ENST00000554439ENSG00000187790ENST00000267430ENST00000542564ENST00000554030ENST00000554809ENST00000555013ENST00000555484ENST00000556036ENST00000556250ENST00000557110CIL_0005Q7_0002ENSMUSG00000020949ENSMUST00000021332ENSMUSG00000035597ENSMUST00000120580ENSMUST00000129956ENSMUSG00000055884ENSMUST00000058889
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000185246 ENST00000355765 1.651±0.00 2.376±0.00 N/A 3.915±0.00 4.300±0.00 2.946±0.74 0.655±0.00 5.545±0.00 N/A 1.407±0.00 1.133±0.00 8.502±0.92 2.925±1.38 5.995±0.90
ENST00000424478 N/A N/A 2.062±0.00 N/A N/A N/A 0.628±0.00 N/A N/A 1.762±0.00 N/A N/A N/A N/A
ENST00000477626 N/A 1.722±0.00 N/A 2.195±0.00 2.492±0.00 4.081±0.00 N/A 1.630±0.00 N/A 2.195±0.00 N/A 2.298±0.00 N/A N/A
ENST00000553605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554429 N/A 2.862±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554439 N/A N/A N/A N/A 1.614±0.00 N/A N/A N/A 1.556±0.00 1.936±0.00 N/A N/A N/A N/A
ENST00000554785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187790 ENST00000267430 0.060±0.00 N/A N/A 0.172±0.00 0.178±0.00 N/A 0.106±0.00 0.155±0.00 N/A N/A N/A 0.381±0.13 0.068±0.01 0.558±0.03
ENST00000542564 0.276±0.00 0.405±0.00 N/A 0.099±0.01 0.265±0.00 0.277±0.22 0.279±0.04 0.184±0.03 0.125±0.10 N/A N/A 1.104±0.75 0.103±0.05 0.957±0.38
ENST00000553551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554030 N/A N/A 0.594±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554809 N/A N/A N/A 0.180±0.00 0.585±0.33 0.112±0.00 0.189±0.00 0.164±0.00 0.200±0.10 0.069±0.00 0.129±0.00 0.496±0.23 0.134±0.01 0.964±0.23
ENST00000555013 N/A N/A N/A N/A N/A 0.383±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555484 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.279±0.00 N/A 3.922±0.00 1.423±0.00 7.735±0.00
ENST00000556036 N/A N/A N/A N/A 0.803±0.00 1.313±0.00 N/A N/A N/A 0.278±0.00 N/A N/A N/A N/A
ENST00000556250 N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.063±0.00 N/A N/A 0.037±0.00 N/A
ENST00000557110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.299±0.00 0.809±0.30 4.297±1.28
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020949 ENSMUST00000021332 9.022±1.57 10.302±1.03 31.634±0.80 89.693±32.60 8.927±1.11 4.525±0.31 60.601±6.67 17.657±5.29 32.742±27.46 9.912±1.69 104.439±7.07 41.479±34.76 78.337±23.15 10.124±8.98
ENSMUSG00000035597 ENSMUST00000120580 N/A 1.589±0.33 10.770±0.56 8.025±1.94 1.885±0.00 2.466±1.21 2.125±0.42 1.226±0.00 5.558±2.46 4.553±0.00 3.162±0.13 9.946±1.35 7.303±1.27 1.019±0.31
ENSMUST00000129956 1.723±0.00 2.508±0.31 2.825±0.01 N/A 2.118±0.51 1.289±0.06 N/A 1.171±0.00 1.461±0.03 N/A N/A 3.754±1.38 2.700±0.58 0.635±0.00
ENSMUSG00000055884 ENSMUST00000058889 1.241±0.25 1.875±0.58 0.339±0.05 2.386±0.20 0.977±0.18 0.578±0.09 0.246±0.08 0.586±0.10 1.335±1.23 0.465±0.04 0.163±0.06 1.947±0.59 1.930±1.28 0.690±0.16

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