C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bestrophin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059072 Best2-201 ENSMUSG00000052819 10090 - 8:85007202-85014408 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000059072
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000059072 0.013±0.00 0.056±0.03 0.033±0.01 0.024±0.00 0.036±0.01 14.535±8.99 0.013±0.00 0.014±0.00 0.017±0.01 0.058±0.01 0.066±0.04 0.029±0.02 0.033±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005254 IDA chloride channel activity
GO:0005886 IEA plasma membrane
GO:0005929 IDA cilium
GO:0006821 IDA chloride transport
GO:0007608 IEP sensory perception of smell
GO:0034707 IEA chloride channel complex
GO:0051899 IDA membrane depolarization
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000042931 BEST2-201 protein_coding Homo_sapiens 0 1389
ENST00000549706 BEST2-002 protein_coding Homo_sapiens 0 1408
ENST00000553030 BEST2-001 protein_coding Homo_sapiens 0 1408

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