C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pyruvate dehyrogenase phosphatase catalytic subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059588 Pdp2-201 ENSMUSG00000048371 10090 + 8:104591468-104596836 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059588
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059588 3.168±2.57 8.544±0.28 1.123±0.00 5.093±2.29 7.397±0.62 1.793±0.37 4.642±0.82 5.040±1.66 2.171±0.89 1.062±0.20 5.506±1.88 0.603±0.23 0.751±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0002 VISTA 8:104309522-104912018
CIL_0004GC CIL_0004GC_0002 CGP 8:104534700-104596836
CIL_0004IP CIL_0004IP_0002 CGP 8:104591468-104624396

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004722 IEA protein serine/threonine phosphatase activity
GO:0004724 IEA magnesium-dependent protein serine/threonine phosphatase activity
GO:0004741 IEA [pyruvate dehydrogenase (lipoamide)] phosphatase activity
GO:0005739 IDA mitochondrion
GO:0006470 IEA protein dephosphorylation
GO:0035970 IEA peptidyl-threonine dephosphorylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311765 PDP2-001 protein_coding Homo_sapiens 0 1504
ENST00000561704 PDP2-009 protein_coding Homo_sapiens 1.99965e-42 176
ENST00000566543 PDP2-002 protein_coding Homo_sapiens 0 309
ENST00000566776 PDP2-005 protein_coding Homo_sapiens 0 634
ENST00000566805 PDP2-004 nonsense_mediated_decay Homo_sapiens 7e-17 92
ENST00000568398 PDP2-003 protein_coding Homo_sapiens 2e-16 90
ENST00000568869 PDP2-006 protein_coding Homo_sapiens 0 326

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