C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059851 Dcun1d3-001 ENSMUSG00000048787 10090 - 7:119853163-119895745 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059851
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059851 2.513±0.18 1.380±0.21 2.916±0.08 3.458±2.40 2.305±0.29 0.848±0.29 0.813±0.35 1.943±0.28 0.798±0.30 2.743±0.47 1.419±0.24 1.880±0.93 0.993±0.36 3.724±1.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MY CIL_0003MY_0002 CGP 7:119794006-119896291
CIL_0003N9 CIL_0003N9_0002 CGP 7:119853163-119916756

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0010225 ISS response to UV-C
GO:0010332 ISS response to gamma radiation
GO:0030308 ISS negative regulation of cell growth
GO:0043065 ISS positive regulation of apoptotic process
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324344 DCUN1D3-001 protein_coding Homo_sapiens 0 2163
ENST00000412082 LYRM1-002 protein_coding Homo_sapiens 0 241
ENST00000439021 LYRM1-202 protein_coding Homo_sapiens 0 241
ENST00000517817 RP11-281O15.2-001 processed_pseudogene Homo_sapiens 0 1066
ENST00000563934 DCUN1D3-002 protein_coding Homo_sapiens 0 1879
ENST00000564349 ERI2-014 protein_coding Homo_sapiens 0 233
ENST00000564457 LYRM1-007 processed_transcript Homo_sapiens 0 302
ENST00000568663 LYRM1-008 protein_coding Homo_sapiens 4e-31 139

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