C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059983 Vamp8-001 ENSMUSG00000050732 10090 - 6:72385223-72390703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059983
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059983 42.646±12.39 58.667±8.00 120.749±15.71 6.615±0.60 66.571±25.62 107.153±23.60 36.213±3.07 184.371±13.27 136.386±37.00 183.046±31.25 29.787±4.05 54.904±15.49 124.066±42.00 6.454±1.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0002 VISTA 6:71915186-72518828
CIL_00084P CIL_00084P_0002 VISTA 6:71915200-72518764
CIL_0009AX CIL_0009AX_0002 VISTA 6:72353769-72955984

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000046 ISS autophagic vacuole fusion
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005765 ISS lysosomal membrane
GO:0005769 TAS early endosome
GO:0006461 IEA protein complex assembly
GO:0006906 IEA vesicle fusion
GO:0009986 IDA cell surface
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0019905 IEA syntaxin binding
GO:0030100 IMP regulation of endocytosis
GO:0030141 IDA secretory granule
GO:0031201 ISS SNARE complex
GO:0031902 ISS late endosome membrane
GO:0035493 IDA SNARE complex assembly
GO:0046718 ISO viral entry into host cell
GO:0055037 IEA recycling endosome
GO:0061025 IEA membrane fusion
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263864 VAMP8-001 protein_coding Homo_sapiens 0 433
ENST00000409760 VAMP8-003 protein_coding Homo_sapiens 0 193
ENST00000432071 VAMP8-002 protein_coding Homo_sapiens 0 331

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