C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle-associated membrane protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263864 VAMP8-001 ENSG00000118640 9606 + 2:85577491-85582031 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263864
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263864 10.792±0.00 38.875±0.00 9.592±0.00 1.275±0.83 14.022±10.59 14.916±2.24 3.323±3.07 51.864±41.34 30.714±26.71 77.974±64.08 1.456±0.00 34.510±34.33 173.692±48.25 13.344±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AX CIL_0009AX_0001 VISTA 2:84977509-85579132
CIL_0007WR CIL_0007WR_0001 VISTA 2:85469895-86073896
CIL_00084P CIL_00084P_0001 VISTA 2:85470344-86073882
CIL_0004ID CIL_0004ID_0002 CGP 2:85561562-85593412

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000046 IMP autophagic vacuole fusion
GO:0005484 IEA SNAP receptor activity
GO:0005515 IEA protein binding
GO:0005739 IEA mitochondrion
GO:0005765 IDA lysosomal membrane
GO:0005769 TAS early endosome
GO:0005886 TAS plasma membrane
GO:0006461 IEA protein complex assembly
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0006906 IEA vesicle fusion
GO:0009986 IEA cell surface
GO:0015031 IEA protein transport
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019905 IEA syntaxin binding
GO:0030100 IEA regulation of endocytosis
GO:0030141 IEA secretory granule
GO:0030667 TAS secretory granule membrane
GO:0031201 IDA SNARE complex
GO:0031902 IDA late endosome membrane
GO:0035493 IEA SNARE complex assembly
GO:0046718 IMP viral entry into host cell
GO:0055037 IEA recycling endosome
GO:0061024 TAS membrane organization
GO:0061025 IEA membrane fusion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059983 Vamp8-001 protein_coding Mus_musculus 0 433
ENSMUST00000142613 Vamp8-002 retained_intron Mus_musculus 0 361

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