C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: human immunodeficiency virus type I enhancer binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060148 Hivep1-201 ENSMUSG00000021366 10090 + 13:42052021-42185026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060148
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060148 6.429±1.35 8.266±0.32 4.239±0.54 7.152±1.27 7.463±1.75 11.840±0.26 2.925±0.60 4.250±0.92 1.555±0.55 9.165±2.51 2.331±0.26 5.582±1.43 3.900±2.32 3.392±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037U CIL_00037U_0002 CGP 13:41763148-42185026
CIL_0008Y7 CIL_0008Y7_0002 VISTA 13:41958101-42559051
CIL_00037V CIL_00037V_0002 CGP 13:42052021-42307989

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003676 IDA nucleic acid binding
GO:0003677 IDA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005739 IEA mitochondrion
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379388 HIVEP1-001 protein_coding Homo_sapiens 0 2418
ENST00000399469 HIVEP1-003 nonsense_mediated_decay Homo_sapiens 0 228
ENST00000541134 HIVEP1-201 protein_coding Homo_sapiens 0 2399

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