C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibroblast growth factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060336 Fgf4-201 ENSMUSG00000050917 10090 + 7:144861386-144865243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLungMuscleENSMUST00000060336
Transcript ID Brain Breast Colon Kidney Lung Muscle
ENSMUST00000060336 0.005±0.00 0.067±0.05 0.058±0.05 0.024±0.00 0.014±0.00 0.028±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TF CIL_0007TF_0002 VISTA 7:144693485-145297342
CIL_0007SN CIL_0007SN_0002 VISTA 7:144817158-145418950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001502 IGI cartilage condensation
GO:0001934 IDA positive regulation of protein phosphorylation
GO:0005104 IPI fibroblast growth factor receptor binding
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0008083 IEA growth factor activity
GO:0008284 IGI positive regulation of cell proliferation
GO:0008543 IGI fibroblast growth factor receptor signaling pathway
GO:0010463 IEA mesenchymal cell proliferation
GO:0010468 IDA regulation of gene expression
GO:0010628 IDA positive regulation of gene expression
GO:0019827 IGI stem cell maintenance
GO:0030326 IGI embryonic limb morphogenesis
GO:0035116 IGI embryonic hindlimb morphogenesis
GO:0042475 IDA odontogenesis of dentin-containing tooth
GO:0043066 IGI negative regulation of apoptotic process
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0051781 IEA positive regulation of cell division
GO:0060363 IDA cranial suture morphogenesis
GO:0060561 IGI apoptotic process involved in morphogenesis
GO:0060591 IEA chondroblast differentiation
GO:0070374 IEA positive regulation of ERK1 and ERK2 cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000168712 FGF4-001 protein_coding Homo_sapiens 0 582
ENST00000538040 FGF4-002 processed_transcript Homo_sapiens 0 248

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