C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: selenoprotein N, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060435 Sepn1-001 ENSMUSG00000050989 10090 - 4:134537892-134552166 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060435
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060435 19.509±4.74 14.906±1.24 13.208±0.58 12.372±6.84 14.731±1.73 4.790±0.33 8.024±0.97 4.105±0.27 2.121±1.57 17.776±2.77 1.001±0.38 19.583±6.85 15.861±12.05 0.360±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HZ CIL_0008HZ_0002 VISTA 4:134170100-134773977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354177 SEPN1-201 protein_coding Homo_sapiens 0 1849
ENST00000361547 SEPN1-001 protein_coding Homo_sapiens 0 1591
ENST00000374315 SEPN1-002 protein_coding Homo_sapiens 0 1888
ENST00000494537 SEPN1-003 processed_transcript Homo_sapiens 0 448
ENST00000559265 RP1-317E23.6-002 retained_intron Homo_sapiens 0 339

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